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Human Herpesvirus 2 Search Results

Record: 1 of 1  
MiniMap IGR8 IGR9 IGR7 UL12, - HHVTW014 UL8, - HHVTW010 UL9, - HHVTW012 UL10, - HHVTW011 UL6, - HHVTW007 UL12, - HHVTW014 UL8, - HHVTW010 UL9, - HHVTW012 UL10, - HHVTW011 UL6, - HHVTW007 Type: tandem, Name: tandem 14 - 19 UL12, - HHVTW014 UL8, - HHVTW010 UL11, - HHVTW013 UL8.5, - HHVTW010.1 UL11, - HHVTW013 UL8.5, - HHVTW010.1 UL9, - HHVTW012 UL10, - HHVTW011 UL6, - HHVTW007 UL7, - HHVTW009 UL7, - HHVTW009


Gene ID:HHVTW010.1

GenBank Locus Tag:

DNA Molecule Name:
1  

GenBank ID:


Gene Name:
UL8.5  

Definition:
unknown

Cellular Location:
[Evidence]

Gene Start:
22178

Gene Stop:
20715

Gene Length:
1464

Molecular Weight*:
54401

pI*:
8.30

Net Charge*:
10.69

EC:
 

Functional Class:

Gene Ontology:

Pathway: pathway table

Secondary Evidence:
Baradaran K, Dabrowski CE, Schaffer PA, Transcriptional analysis of the region of the herpes simplex virus type 1 genome containing the UL8, UL9, and UL10 genes and identification of a novel delayed-early gene product, OBPC, J Virol 1994 Jul;68(7):4251-61, Medline: 94267884.

Comment:
This is a hypothetical protein, determined by similarity to UL8.5 in HSV-1. Baradaran et al.(1994) locate a new protein, designated UL8.5, they map to a transcript which overlaps and is in frame with the carboxyl terminal of UL9.

Blast Summary:  PSI-Blast Search
This sequence is 88% similar using gapped BLASt UL8.5 in HSV-1.
and is 47% similar to to residues 1-470 of the UL8.5 protein in Suid herpesvirus 1 (CAA65907).

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|9629278|ref|NP_044478.1| UL9 [Human herpesvirus 2] >gnl|BL_OR...   989   0.0  
 gi|9629389|ref|NP_044610.1| UL9 [Human herpesvirus 1] >gnl|BL_OR...   883   0.0  
 gi|30984437|ref|NP_851868.1| Ori binding protein [Cercopithecine...   771   0.0  
 gi|9626790|ref|NP_041062.1| origin-binding protein [Equine herpe...   466   e-130
 gi|9629781|ref|NP_045270.1| 53 [Equine herpesvirus 4] >gnl|BL_OR...   450   e-125
 gi|1478257|emb|CAA65907.1| UL8.5 [Pseudorabies virus]                 393   e-108
 gi|1478256|emb|CAA65906.1| UL9 [Pseudorabies virus]                   393   e-108
 gi|10834878|ref|NP_066839.1| UL9 protein [Gallid herpesvirus 3] ...   389   e-107
 gi|9635044|ref|NP_057767.1| OBP [Gallid herpesvirus 2] >gnl|BL_O...   379   e-104
 gi|971247|gb|AAA75004.1| UL9 homolog [Gallid herpesvirus 1]           379   e-104


COGS Summary:  COGS Search
None.

Blocks Summary:  Blocks Search
None.

ProDom Summary:  Protein Domain Search
Residues 14-290, 292-357 and 358-487 constitute domains (PD00438, PD017642,PD006134) as seen in P89432_VVVVV.

Paralogs:  Local Blast Search
This sequence is identical with the carboxyl 487 residues of UL9.

Pfam Summary:  Pfam Search
Residues 1-480 place UL8.5 in the Herpes_ori_bp family described as Origin of replication binding protein.

Top PDB Hits:
None.

Gene Protein Sequence:
MFAYVKPMNYGPDMVSVYQSLGRVRTLRKGELLIYMDGSGARSEPVFTPM
LLNHVVSASGQWPAQFSQVTNLLCRRFKGRCDASHADAAQARGSRIYSKF
RYKHYFERCTLACLADSLNILHMLLTLNCMHVRFWGHDAALTPRNFCLFL
RGIHFDALRAQRDLRELRCQDPDTSLSAQAAETEEVGLFVEKYLRPDVAP
AEVVALMRGLNSLVGRTRFIYLVLLEACLRVPMAAHSSAIFRRLYDHYAT
GVIPTINAAGELELVALHPTLNVAPVWELFRLCSTMAACLQWDSMAGGSG
RTFSPEDVLELLNPHYDRYMQLVFELGHCNVTDGPLLSEDAVKRVADALS
GCPPRGSVSETEHALSLFKIIWGELFGVQLAKSTQTFPGAGRVKNLTKRA
IVELLDAHRIDHSACRTHRQLYALLMAHKREFAGARFKLRAPAWGRCLRT
HASGAQPNTDIILEAALSELPTEAWPMMQGAVNFSTL$

Gene Nucleotide Sequence:  Sequence Viewer
ATGTTCGCCTACGTGAAACCCATGAACTACGGGCCGGACATGGTGTCCGT
GTACCAGTCGCTGGGGCGGGTACGGACTCTCCGCAAGGGGGAGCTGCTGA
TCTACATGGACGGGTCCGGGGCGCGCTCGGAGCCCGTCTTTACGCCCATG
CTGCTCAACCACGTGGTGAGCGCCAGCGGGCAGTGGCCGGCACAGTTTTC
CCAGGTGACGAACCTGTTGTGCCGCCGGTTCAAAGGGCGCTGCGACGCGT
CGCACGCCGACGCGGCGCAGGCGCGGGGGTCGCGCATCTACAGCAAATTC
CGGTACAAGCACTACTTCGAGAGGTGCACGCTGGCGTGCCTCGCGGACAG
TCTTAACATCCTCCACATGCTTCTGACCCTCAACTGCATGCACGTGCGGT
TCTGGGGCCACGACGCCGCGCTGACCCCGAGGAACTTTTGTCTGTTTTTG
CGGGGGATACATTTTGATGCCCTGAGGGCCCAGCGGGATCTGCGGGAGCT
GCGCTGCCAGGACCCCGACACGTCCCTGTCGGCCCAGGCCGCCGAGACGG
AGGAGGTGGGCCTTTTCGTCGAAAAGTACCTCCGGCCGGACGTCGCGCCG
GCCGAGGTGGTCGCGCTCATGCGCGGCCTCAACAGCCTGGTCGGCCGCAC
GCGGTTCATCTACCTGGTGCTGCTGGAGGCCTGTCTTCGCGTCCCCATGG
CCGCCCATAGCAGCGCCATCTTCCGGCGGCTTTACGACCACTACGCCACG
GGCGTCATCCCCACGATCAACGCCGCCGGAGAGCTGGAGCTTGTGGCCCT
ACACCCCACCCTAAACGTCGCCCCCGTCTGGGAGCTGTTCCGTCTGTGCA
GCACCATGGCCGCGTGCCTGCAGTGGGACTCGATGGCCGGGGGGTCGGGG
CGAACCTTTAGCCCCGAGGACGTGCTGGAGCTGCTGAACCCCCACTACGA
CCGCTACATGCAGCTGGTGTTCGAACTGGGCCACTGTAACGTGACCGACG
GCCCCTTGCTGTCGGAGGACGCGGTTAAGCGCGTGGCCGACGCCCTGAGC
GGCTGCCCCCCGCGCGGGTCCGTGAGCGAGACGGAGCACGCGCTGTCGCT
GTTCAAGATCATCTGGGGCGAACTGTTCGGGGTGCAGCTGGCCAAGAGCA
CGCAGACGTTTCCCGGGGCGGGGCGCGTTAAAAACCTCACCAAGCGAGCC
ATCGTGGAGCTGCTGGACGCCCACCGCATCGACCACAGCGCCTGCCGGAC
GCACAGACAGCTGTACGCGCTGCTGATGGCCCATAAGCGGGAGTTTGCGG
GCGCGCGCTTCAAGCTGCGCGCGCCCGCGTGGGGGCGCTGCTTGCGCACG
CACGCCTCCGGCGCCCAGCCCAACACTGACATCATTCTCGAGGCGGCTCT
GTCGGAGCTTCCCACCGAGGCCTGGCCCATGATGCAGGGGGCGGTGAACT
TTAGCACCCTATAA

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