Search Results

Record: 1 of 1 MiniMap

Gene ID:HHVTW019.1GenBank Locus Tag:DNA Molecule Name: 1 GenBank ID:Gene Name: UL15.5 Definition: unknownCellular Location: [Evidence]Gene Start: 33894Gene Stop: 34772Gene Length: 879Molecular Weight*: 31619pI*: 6.40Net Charge*: -2.41EC: Functional Class:Gene Ontology:Pathway: pathway tableSecondary Evidence: Yu D, Weller SK, Genetic analysis of the UL15 gene locus for the putative terminase of herpes simplex virus type 1, Virology 1998 Mar 30;243(1):32, Medline: 98201643.Comment: This is a hypothetical gene, determined by similarity of sequence with it's HSV-1 counterpart. UL15.5 is coterminal and in frame with UL15. In HSV-1 it is essential for growth in cell culture, Roizman, personal communication.Blast Summary: PSI-Blast Search Gapped BLAST reveals significant similarity of this sequence to counterparts in Equine herpesvirus 1 and 4 (VTER_HSVEB and AAC59564.1) and HHV-3 (VTER_VZVD) as well as less similarity to counterpart in many other Herpesviridae. It is 91% similar to UL15.5 in HSV-1.Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|9629284|ref|NP_044484.1| UL15 [Human herpesvirus 2] >gnl|BL_O... 579 e-164 gi|9629397|ref|NP_044616.1| UL15 [Human herpesvirus 1] >gnl|BL_O... 526 e-148 gi|30984443|ref|NP_851874.1| UL15 [Cercopithecine herpesvirus 1]... 484 e-136 gi|20452460|gb|AAM22108.1|AF501667_7 DNA packaging protein [Cerc... 480 e-134 gi|18307972|gb|AAL67783.1|AF458647_5 UL15 [Squirrel monkey herpe... 419 e-116 gi|9629774|ref|NP_045262.1| 47/44 [Equine herpesvirus 4] >gnl|BL... 343 2e-93 gi|9626782|ref|NP_041054.1| DNA packaging protein [Equine herpes... 342 3e-93 gi|13242438|ref|NP_077457.1| unknown [Cercopithecine herpesvirus... 332 4e-90 gi|76472|pir||G27341 hypothetical protein ORF42 - human herpesvi... 330 2e-89 gi|9625919|ref|NP_040165.1| DNA packaging protein [Human herpesv... 330 2e-89COGS Summary: COGS Search None.Blocks Summary: Blocks Search No significant hits.ProDom Summary: Protein Domain Search Residues 1-288 constitute a probable DNA packaging domain (PD00417) as seen in P89438_VVVVV.Paralogs: Local Blast Search UL15.5 is identical to the 292 carboxyl terminal residues of UL15.Pfam Summary: Pfam Search Residues 1-288 (E value of 7.9e-152) place UL15.5 in the DNA_pack_C family, described as Probable DNA packing protein, C-terminus.Structural Feature(s):

`Feature Type`	`Start`	`Stop`
`transmembrane`	`86`	`103`
`transmembrane`	`108`	`125`
`transmembrane`	`266`	`283`

Top PDB Hits: None.Gene Protein Sequence: MDGAVRRTADLFLPDSFMQEIIGGQARETGDDRPVLTKSAGERFLLYRPS TTTNSGLMAPELYVYVDPAFTANTRASGTGIAVVGRYRDDFIIFALEHFF LRALTGSAPADIARCVVHSLAQVLALHPGAFRSVRVAVEGNSSQDSAVAI ATHVHTEMHRILASAGANGPGPELLFYHCEPPGGAVLYPFFLLNKQKTPA FEYFIKKFNSGGVMASQELVSVTVRLQTDPVEYLSEQLNNLIETVSPNTD VRMYSGKRNGAADDLMVAVIMAIYLAAPTGIPPAFFPITRTS$Gene Nucleotide Sequence: Sequence Viewer ATGGACGGCGCCGTTCGCCGGACGGCCGATCTGTTTCTGCCCGACTCCTT CATGCAGGAGATCATCGGGGGGCAGGCCCGCGAGACCGGCGACGACCGGC CCGTCCTAACAAAGTCGGCGGGGGAGCGGTTTCTGCTGTACCGCCCCTCC ACCACCACCAACAGCGGCCTGATGGCCCCCGAGCTGTACGTGTACGTGGA CCCGGCGTTCACGGCCAACACGCGCGCCTCCGGCACCGGCATCGCGGTCG TCGGGAGGTACCGCGACGATTTCATTATCTTCGCCCTGGAGCACTTTTTC CTCCGCGCGCTCACGGGATCGGCCCCCGCGGACATCGCCCGCTGCGTCGT GCACAGCCTCGCCCAGGTGCTGGCGCTGCACCCCGGGGCGTTTCGCAGCG TTCGCGTGGCGGTCGAGGGCAACAGCAGCCAGGACTCGGCCGTGGCCATC GCCACACACGTGCATACCGAGATGCACCGCATCCTGGCCTCGGCGGGGGC CAACGGCCCGGGGCCCGAGCTCCTCTTCTATCACTGCGAGCCGCCCGGCG GCGCGGTATTGTACCCCTTCTTTCTGCTCAACAAACAGAAGACGCCCGCC TTCGAATACTTTATCAAAAAGTTCAACTCCGGGGGCGTCATGGCGTCCCA GGAGCTCGTCTCCGTGACGGTGCGCCTGCAGACCGACCCGGTCGAGTATC TGTCCGAGCAGCTCAACAACCTCATCGAAACCGTCTCTCCCAACACCGAC GTCCGCATGTACTCCGGAAAACGCAACGGTGCCGCGGACGACCTCATGGT CGCGGTCATCATGGCCATTTACCTGGCGGCCCCGACCGGGATCCCCCCGG CCTTTTTTCCGATCACGCGCACGTCTTGA

Los Alamos National Laboratory • Est 1943