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Human Herpesvirus 2 Search Results

Record: 1 of 1  
MiniMap IGR22 IGR20 IGR23 IGR21 UL28, - HHVTW031 UL27, - HHVTW030 UL29, - HHVTW032 UL25, - HHVTW027 UL26, - HHVTW028 UL27.5, - HHVTW029.1 UL28, - HHVTW031 UL27, - HHVTW030 UL29, - HHVTW032 UL25, - HHVTW027 UL26, - HHVTW028 UL27.5, - HHVTW029.1 Type: tandem, Name: tandem 15 - 20 Type: tandem, Name: tandem 16 - 21 UL28, - HHVTW031 UL27, - HHVTW030 UL29, - HHVTW032 UL25, - HHVTW027 UL27.5, - HHVTW029.1 UL26.5, - HHVTW029 UL26, - HHVTW028 UL26.5, - HHVTW029


Gene ID:HHVTW029.1

GenBank Locus Tag:

DNA Molecule Name:
1  

GenBank ID:


Gene Name:
UL27.5  

Definition:
unknown

Cellular Location:
[Evidence]

Gene Start:
53340

Gene Stop:
56297

Gene Length:
2958

Molecular Weight*:
104770

pI*:
11.70

Net Charge*:
58.28

EC:
 

Functional Class:

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Chang YE, Menotti L, Filatov F, Campadelli-Fiume G, Roizman B, UL27.5 is a novel gamma2 gene antisense to the herpes simplex virus 1 gene encoding glycoprotein B, J Virol 1998 Jul;72(7):6056-64, Medline: 98285767.

Comment:
Chang et al.(1998) locate a gene in both HSV-1 and HSV-2 which is antisense to UL27 and designate it UL27.5. In HSV-1 they report it is a cytoplasmic protein, shares an epitope with gJ and has gamma-2 expression regulation. The calculated weight of the HSV-2 protein is significantly greater than found in infected cells, while using the only alternate methionine initiation codon predicts a protein with a smaller molecular weight than found experimentally.

Blast Summary:  PSI-Blast Search
Residues 414-985 is 74% similar to residues 1-575 of UL27.5 in HSV-1. Gapped BLAST locates no other similarities in any organism.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|2119156|pir||S28774 collagen alpha chain - tube worm (Riftia ...    60   2e-07
 gi|263810|gb|AAB24972.1| collagen alpha chain [Riftia pachyptila...    57   1e-06
 gi|399170|sp|P30754|CAFF_RIFPA FIBRIL-FORMING COLLAGEN ALPHA CHAIN     57   1e-06
 gi|9625624|ref|NP_039875.1| nuclear antigen EBNA1 [Human herpesv...    57   1e-06
 gi|93144|pir||B40505 hypothetical protein - suid herpesvirus 1 (...    57   2e-06
 gi|9453859|dbj|BAB03282.1| EBNA-1 [Cynomolgus Epstein-Barr Virus...    57   2e-06
 gi|16124992|ref|NP_419556.1| hypothetical protein [Caulobacter c...    56   3e-06
 gi|21741789|emb|CAD41796.1| OSJNBa0008M17.12 [Oryza sativa (japo...    56   3e-06
 gi|2498095|sp|Q63003|5E5_RAT 5E5 ANTIGEN >gnl|BL_ORD_ID|547951 g...    55   5e-06
 gi|16127285|ref|NP_421849.1| hypothetical protein [Caulobacter c...    55   6e-06


COGS Summary:  COGS Search
None.

Blocks Summary:  Blocks Search
None.

ProDom Summary:  Protein Domain Search
No significant hits.

Paralogs:  Local Blast Search
None.

Pfam Summary:  Pfam Search
None.

Structural Feature(s):
Feature Type  Start  Stop
non-globular  
1  
985

Top PDB Hits:
None.

Gene Protein Sequence:
MCIFEHRCLFIYTQAQLPSPPLELVFVSGLVLVVERRVPGFVALAQNHVG
DLGAEQGARALLSGLVFRALHGRHQSHISDHFSGLGQLGLVKPAPLRAFL
PLPAHAPGVGSLEFLGGERIQGLHGIALQLQDVAEGEEGRDQAGQDQQPH
GKRPEGVGHKGGHARDGRHHAPHYSHDYLADRAPQVPHPLEERAQPREHG
GVGVGADDRVDVGKAQVVQLVAALDLRVVQQAAVLDLVARVDLQGHKLVV
LQHGDVQVDEGADGGDVGATQLVRVRVLLEVHVAPAEDEVAPVAHGARLE
RVAGEAQLVVLAQLPLDQRALVFVPKADQGAAVARPRPRADAHRVLHDHV
VRGDGHARGDGHDVSEHARAHPPADGGGGDGVGVELAGLVPESQLVVLQL
APRDGDAPQHVIHVALYVVIRKLQPGELDRGGGLDALHGRVGAGRLPQWR
GRGIPGLAVLLPHVLPHVQLGERVAEEGLVRDEEAPRGQVVLRLAHLDVR
GVVLARKHAVDGLAGIPADAVAQVDARERVLGQVGGEGGRDGVGGEAEGA
AVLGAEHLVHLLPLGHGADRRSLRHPVPGHGKLGGRQQVAGRRRRGPGLR
GEVARVEAVDLLEAVGGVAGVLGVRPLPVAVKRGHVHKVARRQHKLIVRV
HRPRVHLLDDAVDRRAVPMERLHPRGVVLEVGGVPPPARARGDLRRLELH
VGLVVVPVKRGGLHVVPHVLGRGAADPLGVNLVDHLLEGNGGAVLEYPHK
LGVAVAEPHLRHGHVFVVHGGLEFVRGDVLLEDHRDALRVVLPLRARRAA
ARLLKLHHRGARRGRAHVKLGIGVLDLDFPQVRAQRGVAGGDGRVGVGGR
GRLGPLGRLFGFPLPGLGGRGARDGGRPGGGTPVRRDGRGHAARGAGGRR
GRRGRRRHRGHQRPHDQRANQAPPAHGGPTGARRSRRPLVWGRGAAGPSR
GWKKRLGRKPRPSGVRCSRRGRSRRWPPADSRSCT$

Gene Nucleotide Sequence:  Sequence Viewer
ATGTGTATTTTTGAACATCGGTGTCTTTTTATTTATACACAAGCCCAGCT
CCCCTCCCCTCCCTTAGAGCTCGTCTTCGTCTCCGGCCTCGTCCTCGTTG
TGGAGCGGAGAGTACCTGGCTTTGTTGCGCTTGCGCAGAACCATGTTGGT
GACCTTGGAGCTGAGCAGGGCGCTCGTGCCCTTCTTTCTGGCCTTGTGTT
CCGTGCGCTCCATGGCCGACACCAAAGCCATATATCGGATCATTTCTCGG
GCCTCGGCCAACTTGGCCTCGTCAAACCCGCCCCCCTCCGCGCCTTCCTC
CCCCTCCCCGCCCACGCCCCCGGGGTCGGAAGTCTTGAGTTCCTTGGTGG
TGAGCGGATACAGGGCCTTCATGGGATTGCGTTGCAGTTGCAGGACGTAG
CGGAAGGCGAAGAAGGCCGCGACCAGGCCGGCCAGGACCAGCAGCCCCAC
GGCAAGCGCCCCGAAGGGGTTGGACATAAAGGAGGACACGCCCGAGACGG
CCGACACCACGCCCCCCACTACTCCCATGACTACCTTGCCGACCGCGCGC
CCCAAGTCCCCCATCCCCTCGAAGAACGCGCACAGCCCCGCGAACATGGC
GGCGTTGGCGTCGGCGCGGATGACCGTGTCGATGTCGGCAAAGCGCAGGT
CGTGCAGCTGGTTGCGGCGCTGGACCTCCGTGTAGTCCAGCAGGCCGCTG
TCCTTGATCTCGTGGCGCGTGTAGACCTCCAGGGGCACAAACTCGTGGTC
CTCCAGCATGGTGATGTTCAGGTCGATGAAGGTGCTGACGGTGGTGACGT
CGGCGCGACTCAGCTGGTGAGAGTACGCGTACTCCTCGAAGTACACGTAG
CCCCCGCCGAAGATGAAGTAGCGCCGGTGGCCCACGGTGCACGGCTCGAG
CGCGTCGCGGGTGAGGCGCAGCTCGTTGTTCTCGCCCAGCTGCCCCTCGA
TCAGCGGGCCCTGGTCTTCGTACCGAAAGCTGACCAGGGGGCGGCTGTAG
CACGTCCCCGGCCGCGAGCTGACGCGCATCGAGTTCTGCACGATCACGTT
GTCCGGGGCGACGGGCACGCACGTGGAGACGGCCATGACGTCTCCGAGCA
TGCGCGCGCTCACCCGCCGGCCGACGGTGGCGGAGGCGATGGCGTTGGGG
TTGAGCTTGCGGGCCTCGTTCCAGAGAGTCAGCTCGTGGTTCTGCAGCTC
GCACCACGCGACGGCGATGCGCCCCAGCATGTCATTCACGTGGCGCTGTA
TGTGGTTATACGTAAACTGCAGCCGGGCGAACTCGATCGAGGAGGTGGTC
TTGATGCGCTCCACGGACGCGTTGGCGCTGGGCGCCTCCCGCAGTGGCGC
GGGCGTGGCATTCCGGGGCTTGCGGTCCTGCTCCCGCATGTACTCCCGCA
CGTACAGCTCGGCGAGCGTGTTGCTGAGGAGGGGCTGGTACGCGATGAGG
AAGCCCCCCGTGGCCAGGTAGTACTGCGGCTGGCCCACCTTGATGTGCGT
GGCGTTGTACTTGCGCGCAAACATGCGGTCGATGGCCTCGCGGGCATCCC
GGCCGATGCAGTCGCCCAGGTCGACGCGCGAGAGCGAGTACTCGGTCAGG
TTGGTGGTGAAGGTGGTCGAGATGGCGTCGGAGGAGAAGCGGAAGGAGCC
GCCGTACTCGGCGCGGAGCATCTCGTCCACCTCCTGCCACTTGGTCATGG
TGCAGACCGCCGGTCGCTTCGGCACCCAGTCCCAGGCCACGGTAAACTTG
GGGGTCGTCAGCAAGTTGCGGGTCGTCGGCGACGTGGCCCGGGCCTTCGT
GGTGAGGTCGCGCGCGTAGAAGCCGTCGACCTGCTTGAAGCGGTCGGCGG
CGTAGCTGGTGTGCTCGGTGTGCGACCCCTCCCGGTAGCCGTAAAACGGG
GACATGTACACAAAGTCGCCCGTCGCCAGCACAAACTCATCGTACGGGTA
CACCGACCGCGCGTCCACCTCCTCGACGATGCAGTTGACCGTCGTGCCGT
ACCGATGGAACGCCTCCACCCGCGAGGGGTTGTACTTGAGGTCGGTGGTG
TGCCACCCCCGGCTCGTGCGCGTGGCGACCTTCGCCGGCTTGAGCTCCAT
GTCGGTCTCGTGGTCGTCCCGGTGAAACGCGGTGGTCTCCATGTTGTTCC
GCACGTACTTGGCCGTGGAGCGGCAGACCCCCTTGGTGTTAATCTTGTCG
ATCACCTCCTCGAAGGGAACGGGGGCGCGGTCCTCGAATATCCCCATAAA
CTGGGAGTAGCGGTGGCCGAACCACACCTGCGACACGGTCACGTCTTTGT
AGTACATGGTGGCCTTGAATTTGTACGGGGCGATGTTCTCCTTGAAGACC
ACCGCGATGCCCTCCGTGTAGTTCTGCCCCTCCGGGCGCGTCGGGCAGCG
GCGCGGCTGCTCAAACTGCACCACCGTGGCGCCCGTCGGGGGCGGGCACA
CGTAAAACTGGGCATCGGCGTTCTCGACCTTGATTTCCCGCAGGTGCGCG
CGCAGCGTGGCGTGGCCGGCGGCGACGGTCGCGTTGGCGTCGGGGGGCGG
GGTCGCCTCGGGCCGCTTGGGCGGCTTTTTGGTTTTCCGCTTCCGGGCCT
TGGTGGTCGCGGGGCTCGGGACGGGGGGCGGCCGGGAGGCGGGACCCCCG
TTCGCCGCGACGGTCGCGGCCACGCCGCCCGAGGCGCGGGGGGCCGCCGG
GGCCGCCGGGGCCGCCGACGCCACCGCGGCCACCAGCGCCCCCACGACCA
GCGCGCAAATCAAGCCCCCCCCGCGCATGGCGGGCCTACGGGGGCGCGTC
GCTCCCGCCGCCCGCTAGTCTGGGGGCGAGGTGCTGCAGGACCGAGTAGA
GGATGGAAAAAACGTCTCGGTCGTAAACCACGACCGAGCGGGGTCCGATG
CAGCCGTCGGGGCCGCTCTCGACGATGGCCACCAGCGGACAGTCGGAGTT
GTACGTGA

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