Search Results

Record: 1 of 1 MiniMap

Gene ID:HHVTW046.1GenBank Locus Tag:DNA Molecule Name: 1 GenBank ID:Gene Name: UL43.5 Definition: unknownCellular Location: [Evidence]Gene Start: 95870Gene Stop: 95400Gene Length: 471Molecular Weight*: 16765pI*: 12.20Net Charge*: 11.92EC: Functional Class:Gene Ontology:Pathway: pathway tableSecondary Evidence: Carter KL, Ward PL, Roizman B, Characterization of the products of the U(L)43 gene of herpes simplex virus 1: potential implications for regulation of gene expression by antisense transcription, J Virol 1996 Nov;70(11):7663-8, Medline: 97048045. Ward PL, Barker DE, Roizman B, A novel herpes simplex virus 1 gene, UL43.5, maps antisense to the UL43 gene and encodes a protein which colocalizes in nuclear structures with capsid proteins, J Virol 1996 May;70(5):2684-90, Medline: 96186692.Comment: This is a hypothetical protein determined by similarity to a counterpart in HSV-1. Ward et al.(1996) report a new gene in HSV-1 antisense to UL43, which they designate UL43.5. They describe it as a low abundance nuclear protein which accumulates in assemblons, is dispensible for growth in cell culture and has gamma expression regulation.Blast Summary: PSI-Blast Search Residues 1-149 are 53% similar to residues 163-309 of UL43.5 in HSV-1. Gapped BLAST reveals no significant similarities to proteins in any other organisms.Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|20983113|ref|XP_159101.1| hypothetical protein XP_159101 [Mus... 50 1e-05 gi|22960097|ref|ZP_00007740.1| hypothetical protein [Rhodobacter... 48 4e-05 gi|29421180|dbj|BAA31680.2| KIAA0705 protein [Homo sapiens] 48 6e-05 gi|3924669|gb|AAC79151.1| atrophin-1 interacting protein 1 [Homo... 48 6e-05 gi|27436957|ref|NP_036433.2| atrophin-1 interacting protein 1; a... 48 6e-05 gi|23063053|ref|ZP_00087804.1| hypothetical protein [Pseudomonas... 47 7e-05 gi|98701|pir||S20590 exo-alpha-sialidase (EC 3.2.1.18) - Actinom... 46 2e-04 gi|2947232|gb|AAC05370.1| membrane associated guanylate kinase 2... 46 2e-04 gi|23008548|ref|ZP_00049948.1| hypothetical protein [Magnetospir... 46 2e-04 gi|23104656|ref|ZP_00091118.1| hypothetical protein [Azotobacter... 46 2e-04COGS Summary: COGS Search None.Blocks Summary: Blocks Search None.ProDom Summary: Protein Domain Search None.Paralogs: Local Blast Search None.Pfam Summary: Pfam Search None.Structural Feature(s):

`Feature Type`	`Start`	`Stop`
`non-globular`	`1`	`156`

Top PDB Hits: None.Gene Protein Sequence: MDVVGQHQQRRVGGPERQALGRRARNPRRRAGLPEAPQGHGRSPADQPQP RAHTRRRPGERGGGAEEPQAGAPDHERPRHGVRIRAARQNDRPHEAQRGG LEPEMREPPSDGTHAGEAGAPVVPIIPSEAVFAAPARDPGAVPATHPAPG ARRRSR$Gene Nucleotide Sequence: Sequence Viewer ATGGACGTCGTCGGCCAGCACCAGCAGCGCCGCGTAGGCGGCCCCGAGCG CCAGGCACTGGGTCGCCGGGCCCGGAACCCCCGGAGGCGCGCCGGCCTCC CCGAGGCTCCACAGGGCCACGGCCGCTCCCCCGCCGACCAGCCTCAGCCA CGCGCACACACGCGTCGGCGGCCGGGCGAACGCGGGGGGGGCGCGGAGGA ACCCCAGGCCGGTGCTCCCGATCACGAACGCCCCCGACATGGCGTCCGCA TACGGGCCGCGCGACAGAACGACAGACCCCACGAAGCCCAGCGTGGCGGC CTGGAGCCAGAGATGCGCGAACCCCCGAGCGATGGCACCCACGCAGGCGA GGCGGGGGCGCCCGTCGTCCCCATCATCCCCTCCGAGGCAGTGTTCGCCG CTCCCGCCCGCGACCCCGGGGCTGTCCCCGCGACACATCCCGCACCCGGG GCCCGACGGCGCTCTCGGTGA

Los Alamos National Laboratory • Est 1943