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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Asn-2 tRNA-Asn-1 IGR0002 IGR0001 IGR0005 IGR0003 IGR0004 IGR1676 IGR0006 PG0003 PG0005 PG0006 PG0002 PG1949 PG0004 dnaA, - PG0001 PG1948 PG0003 PG0005 PG0006 PG0002 PG1949 PG0004 dnaA, - PG0001 PG1948 PG0003 PG0005 PG0006 PG0002 PG1949 PG0004 dnaA, - PG0001 PG1948


LANL Gene ID: PG0002

GenBank Locus Tag: PG0002

DNA Molecule Name:
1  

GenBank ID:
34539882

Gene Name:


Definition:
acetyltransferase/hexapeptide transferase

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1435

Gene Stop:
2004

Gene Length:
570

Molecular Weight*:
20574

pI*:
6.20

Net Charge*:
-2.94

EC:
 

Functional Class:
Uncategorized  

Gene Ontology:
Molecular function
  GO:0008415    acyltransferase activity


Pathway: pathway table

Comment:
Serine-O-acetyltransferases are associated with EC 2.3.1.30.

TIGR ID: PG0002

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Numerous hits to acetyl transferases and serine-O-transferases; e.g. residues 2-165 are 57% similar to an acetyltransferase (AJ248286) of Pyrococcus abyssi, residues 3-155 are 54% similar to WbpD (U50396) of Pseudomonas aeruginosa, residues 2-149 are 33% similar to 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase-related protein (AE001799) of Thermotoga maritima.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539882|ref|NP_904361.1|  hexapeptide transferase family...   384   e-105
 gi|156858333|gb|EDO51764.1|  hypothetical protein BACUNI_043...   248   9e-65
 gi|150008794|ref|YP_001303537.1|  hexapeptide transferase fa...   246   5e-64
 gi|154494436|ref|ZP_02033756.1|  hypothetical protein PARMER...   244   3e-63
 gi|114566245|ref|YP_753399.1|  hexapeptide transferase famil...   241   1e-62
 gi|95926669|ref|ZP_01309447.1|  hypothetical protein CburR_0...   239   5e-62
 gi|29654156|ref|NP_819848.1|  oxidoreductase, Gfo/Idh/MocA f...   239   5e-62
 gi|153208014|ref|ZP_01946548.1|  oxidoreductase, Gfo/Idh/Moc...   238   9e-62
 gi|154706787|ref|YP_001424276.1|  oxidoreductase, NAD-bindin...   238   1e-61
 gi|86134676|ref|ZP_01053258.1|  hexapeptide transferase fami...   238   2e-61


InterPro Summary:  InterProScan

InterPro
IPR001451
Repeat
Bacterial transferase hexapeptide repeat
PF00132 [5-22]T 1100.00029896149 PF00132 Hexapep[29-46]T 7.39999967908914 PF00132 Hexapep[47-64]T 10000.0 PF00132 Hexapep[65-82]T 52000.0089003336 PF00132 Hexapep[98-115]T 13000.006720273 PF00132 Hexapep[116-133]T 7500.000175856429 PF00132 Hexapep Hexapep
PS00101 [107-135]T 8.0E-5 PS00101 HEXAPEP_TRANSFERASES HEXAPEP_TRANSFERASES
InterPro
IPR011004
Domain
Trimeric LpxA-like
SSF51161 [1-185]T 5.699999999999999E-44 SSF51161 Trimer_LpxA_like Trimer_LpxA_like
noIPR
unintegrated
unintegrated
G3DSA:2.160.10.10 [2-150]T 2.9000035467795806E-35 G3DSA:2.160.10.10 G3DSA:2.160.10.10 G3DSA:2.160.10.10
PTHR23416 [111-149]T 4.00000300869916E-11 PTHR23416 PTHR23416 PTHR23416
PTHR23416:SF2 [111-149]T 4.00000300869916E-11 PTHR23416:SF2 PTHR23416:SF2 PTHR23416:SF2


COGS Summary:  COGS Search
BeTs to 4 clades of COG0110
COG name: Acetyltransferases (the isoleucine patch superfamily)
Functional Class: R
The phylogenetic pattern of COG0110 is -Mt-y-vCEBR-------in-
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB001451 (Bacterial transferase hexapeptide repeat) with a combined E-value of 2.3e-10.
    IPB001451A    32-51
    IPB001451B    125-135
    IPB001451A    26-45
    IPB001451A    2-21
    IPB001451A    113-132
    IPB001451A    107-126
    IPB001451B    32-42
    IPB001451B    50-60


 ProDom Summary:  Protein Domain Search
Residues 2-56 are 49% similar to a (ACYLTRANSFERASE TRANSFERASE) protein domain (PD004893 which is seen in LPXA_BRUAB.

Residues 25-149 are 60% similar to a (TRANSFERASE ACYLTRANSFERASE PROTEIN REPEAT BIOSYNTHESIS) protein domain (PD000343 which is seen in Q45377_BBBBB.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
111  
128
transmembrane  
111  
127

Top PDB Hits:
-50% similar to PDB:2IC7 Crystal Structure of Maltose Transacetylase from Geobacillus kaustophilus (E_value = 1.3E_10);

Gene Protein Sequence:
MIHPTAIVEDGCVLGQGTRVWHFSHLMCGAEVGENCNIGQNVVIMPEVRL
GRGCKVQNNVSLYSGVICEDYVFLGPSCVFTNVINPRAFIERKSEYRPTH
LHEGVSIGANATILCGITIGAYAMVGAGTVVIRDVPPYALVVGNPARRIG
WVSRAGHRLSFDDKGMAVCPETGERYREVEETGTIEPVSD

Gene Nucleotide Sequence:  Sequence Viewer
ATGATCCATCCCACAGCGATAGTAGAAGACGGTTGTGTGCTTGGTCAGGG
TACACGCGTATGGCACTTCTCTCACTTGATGTGCGGAGCCGAGGTCGGAG
AGAATTGCAACATCGGGCAGAATGTCGTTATAATGCCGGAGGTACGACTG
GGGCGAGGCTGTAAGGTGCAGAACAACGTTTCTCTGTATAGTGGTGTCAT
ATGCGAAGATTACGTATTCCTCGGACCGAGTTGTGTATTTACCAACGTGA
TCAATCCTCGCGCCTTTATTGAAAGAAAATCCGAATACCGCCCCACTCAT
TTGCACGAAGGCGTCTCCATCGGAGCCAATGCCACTATTCTTTGTGGTAT
TACGATAGGGGCTTATGCCATGGTAGGTGCAGGAACCGTGGTGATTAGGG
ATGTACCGCCCTATGCCTTGGTAGTGGGCAATCCTGCTCGCCGGATCGGT
TGGGTAAGCCGCGCCGGTCACCGCTTGTCGTTCGATGACAAGGGGATGGC
CGTCTGTCCTGAAACGGGCGAACGATATAGAGAGGTCGAAGAAACGGGTA
CAATAGAACCGGTATCGGAC

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