Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Asn-2 tRNA-Asn-1 IGR0002 IGR0001 IGR0005 IGR0003 IGR0004 IGR1676 IGR0006 ISPg5, - PG0007 PG0003 PG0005 PG0006 PG0002 PG1949 PG0004 dnaA, - PG0001 PG1948 ISPg5, - PG0007 PG0003 PG0005 PG0006 PG0002 PG1949 PG0004 dnaA, - PG0001 PG1948 Type: IS element, Name: ISPg5 - 8 ISPg5, - PG0007 PG0003 PG0005 PG0006 PG0002 PG1949 PG0004 dnaA, - PG0001 PG1948


LANL Gene ID: PG0003

GenBank Locus Tag: PG0003

DNA Molecule Name:
1  

GenBank ID:
34539883

Gene Name:


Definition:
probable transmembrane protein

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
3028

Gene Stop:
2012

Gene Length:
1017

Molecular Weight*:
38374

pI*:
10.30

Net Charge*:
12.96

EC:
 

Functional Class:
Uncategorized  

Gene Ontology:
Molecular function
  GO:0016747    transferase activity, transferring groups other than amino-acyl groups


Pathway: pathway table

Comment:
TIGR ID: PG0003

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Two very weak hits using gapped BLAST. One hit to transmembrane protein. Residues 3-296 are 21% similar to transmembrane protein (AJ006986) of Streptococcus pneumoniae. One hit to unknown protein. Residues 6-141 are 29% similar to AE006301 of Lactococcus lactis.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539883|ref|NP_904362.1|  hypothetical protein PG0003 [P...   630   e-179
 gi|17548009|ref|NP_521411.1|  hypothetical protein RSc3292 [...    89   6e-16
 gi|47568575|ref|ZP_00239274.1|  membrane protein, putative [...    88   8e-16
 gi|52145261|ref|YP_086718.1|  probable membrane protein [Bac...    88   8e-16
 gi|49479010|ref|YP_039445.1|  hypothetical protein BT9727_51...    88   8e-16
 gi|30265473|ref|NP_847850.1|  hypothetical protein BA5704 [B...    88   1e-15
 gi|118480483|ref|YP_897634.1|  possible membrane protein [Ba...    88   1e-15
 gi|150025331|ref|YP_001296157.1|  hypothetical protein FP126...    87   1e-15
 gi|33593759|ref|NP_881403.1|  putative integral membrane pro...    83   2e-14
 gi|153810100|ref|ZP_01962768.1|  hypothetical protein RUMOBE...    82   5e-14


InterPro Summary:  InterProScan

InterPro
IPR002656
Domain
Acyltransferase 3
PF01757 [7-336]T 0.0129999995835437 PF01757 Acyl_transf_3 Acyl_transf_3


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 7 to 336 (E-value = 6.9e-06) place PG0003 in the Acyl_transf_3 family which is described as Acyltransferase family (PF01757)

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable signal  
1  
28
transmembrane  
8  
24
transmembrane  
50  
66
transmembrane  
84  
100
transmembrane  
122  
138
non-globular  
156  
201
transmembrane  
157  
173
transmembrane  
243  
259
transmembrane  
281  
297
transmembrane  
313  
329

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MTTKGRNTTVDVLRVLAGLMVIGIHTSGEYVLEGVAEGANFIAGLCWEAV
VQPAVPIFVIISGAFVLGRNETWGDFYRKRIPRLLVLLAFWLPFYWLWLW
LKGDDIGSYLAGFWQGRSFVHLWYVVMLLGLYAVVPLLNEIIRRCEADGE
KAARKRLWTLSTILLLLGILSNTYDYILGYNRFFPFLWPDYLGYFLVGYT
LKSHAPQRSLPALSLYGLSTISLFFASRYAFEHGEGLYFYRNLSPLIVLS
AISLFAFFVSWGGCGGKLARIGKMQGDILGIYLVHIAVLNVVTKILVLTT
PSLMQCAWLNIPIRVGLVFFVSWGVVRLMKRLPICRYLV

Gene Nucleotide Sequence:  Sequence Viewer
ATGACTACCAAGGGGAGGAATACCACCGTCGATGTCCTGCGAGTTCTGGC
AGGATTGATGGTAATCGGCATCCATACTTCGGGAGAATACGTTCTCGAAG
GAGTGGCTGAGGGTGCAAACTTTATAGCCGGTCTATGCTGGGAGGCGGTC
GTGCAGCCGGCCGTTCCTATATTCGTCATTATCAGCGGGGCTTTTGTCTT
GGGACGCAATGAGACGTGGGGAGATTTCTATCGGAAACGAATACCGCGAC
TGCTGGTACTACTCGCTTTTTGGCTTCCGTTCTATTGGCTGTGGCTGTGG
CTCAAGGGCGATGATATAGGTTCCTATCTTGCCGGCTTTTGGCAGGGACG
CTCATTCGTTCATCTGTGGTATGTGGTGATGCTGCTGGGACTTTATGCAG
TCGTTCCTCTGCTCAACGAAATAATTCGCAGGTGCGAAGCCGATGGAGAG
AAGGCTGCTCGTAAACGACTTTGGACTCTCTCTACCATATTGCTACTGCT
GGGGATATTGTCCAACACCTACGATTACATACTCGGTTACAACCGCTTTT
TCCCTTTTCTTTGGCCGGATTATTTGGGATATTTCCTTGTGGGTTATACC
CTGAAGAGCCATGCTCCGCAGCGTTCTTTACCGGCTCTTTCCTTGTACGG
ACTCTCTACGATTTCTCTTTTCTTCGCAAGTCGGTACGCTTTCGAGCACG
GCGAAGGGCTATACTTCTACCGTAATCTCTCTCCTTTGATTGTTCTTTCT
GCTATCAGTCTCTTCGCGTTCTTCGTTTCTTGGGGAGGATGTGGAGGAAA
ATTGGCGCGGATCGGGAAAATGCAGGGGGATATTTTAGGAATCTACTTAG
TACACATCGCTGTGCTGAACGTGGTGACAAAAATACTTGTACTGACCACC
CCCAGCCTGATGCAATGCGCATGGCTCAACATACCGATCCGTGTAGGATT
GGTTTTCTTCGTTTCTTGGGGAGTTGTGCGGCTGATGAAGCGGTTGCCGA
TATGCCGCTATTTGGTC

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy