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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Asn-2 tRNA-Asn-1 IGR0005 IGR0007 IGR0004 IGR0009 IGR0008 IGR0006 ISPg5, - PG0008 ISPg5, - PG0007 PG0005 PG0006 PG0004 clpC, - PG0009 nagA,ybbD, - PG0010 ISPg5, - PG0008 ISPg5, - PG0007 PG0005 PG0006 PG0004 clpC, - PG0009 nagA,ybbD, - PG0010 Type: IS element, Name: ISPg5 - 8 ISPg5, - PG0008 ISPg5, - PG0007 PG0005 PG0006 PG0004 clpC, - PG0009 nagA,ybbD, - PG0010


LANL Gene ID: PG0008

GenBank Locus Tag: PG0009

DNA Molecule Name:
1  

Genomic Island ID:
1

GenBank ID:
34539889

 Gene Name:
ISPg5  

 Definition:
ISPg5-related orf-1

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
8556

Gene Stop:
8170

Gene Length:
387

Molecular Weight*:
14755

pI*:
9.00

Net Charge*:
1.96

EC:
 

 Functional Class:
Transposon functions  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,
Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.
Characterization of Porphyromonas gingivalis insertion
sequence-like element ISPg5. Infect. Immun. 68 (9), 5247-5253 (2000). PubMed: 10948151.

 Comment:
See PG0007 for associated transposase.

Member of the IS3 family of insertion elements.

TIGR ID: PG0009

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
PG0008 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.

Otherwise, no significant hits in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540398|ref|NP_904877.1|  ISPg5, transposase Orf1 [Porph...   219   3e-56
 gi|34539889|ref|NP_904368.1|  ISPg5 transposase Orf1 [Porphy...   218   6e-56
 gi|34540695|ref|NP_905174.1|  ISPg5, transposase Orf1 [Porph...   218   8e-56
 gi|34540249|ref|NP_904728.1|  ISPg5, transposase Orf1 [Porph...   218   1e-55
 gi|7767502|gb|AAF69127.1|AF224744_1  unknown [Porphyromonas ...   211   1e-53
 gi|34540278|ref|NP_904757.1|  ISPg5, transposase Orf1 [Porph...   177   1e-43
 gi|156108434|gb|EDO10179.1|  hypothetical protein BACOVA_045...    73   6e-12
 gi|156112512|gb|EDO14257.1|  hypothetical protein BACOVA_000...    70   4e-11
 gi|29347279|ref|NP_810782.1|  hypothetical protein BT_1869 [...    69   1e-10


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
PG0008 is paralogously related to PG1862, PG1797, PG1490, PG1437, PG0033, PG0532, PG0392, PG1246, PG0840 and PG0419, all ORFs associated with ISPg5-related transposases.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
79  
110

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
LGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSW
LSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKRE
ELGHQAYKLLVELAEETYGIQIRKNSEAK

Gene Nucleotide Sequence:  Sequence Viewer
TTGGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTT
TGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAG
TAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGG
CTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCGGTCCCAATGAAAGT
GTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAGTTAG
AGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAA
GAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAAC
CTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG

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