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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0014 IGR0013 IGR0015 IGR0016 IGR0012 PG0018 ychM, - PG0019 PG0017 PG0012 ISPg4, - PG0016 atoS,ntrB, - PG0014 ntrC, - PG0013 PG0015 PG0018 ychM, - PG0019 PG0017 PG0012 ISPg4, - PG0016 atoS,ntrB, - PG0014 ntrC, - PG0013 PG0015 Type: IS element, Name: ISPg4 - 7 PG0018 ychM, - PG0019 PG0017 PG0012 ISPg4, - PG0016 atoS,ntrB, - PG0014 ntrC, - PG0013 PG0015


LANL Gene ID: PG0015

GenBank Locus Tag: PG0018

DNA Molecule Name:
1  

Genomic Island ID:
1

GenBank ID:
34539896

 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Outer membrane, Cytoplasm [Evidence]

 Gene Start:
19788

Gene Stop:
22031

Gene Length:
2244

Molecular Weight*:
86179

pI*:
10.20

Net Charge*:
18.78

EC:
 

 Functional Class:
Unknown  

 Gene Ontology:

Pathway: pathway table

 Comment:
TIGR ID: PG0018

 Proteomic Data: Proteomic Data Search
TIGR Annotationhypothetical protein, GroupK (hypothetical proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0018-1.840.045-5.220.041-0.140.36-5.220.041
LANLPG00150.280.030.910.05
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No significant hits in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539896|ref|NP_904375.1|  hypothetical protein PG0018 [P...  1524   0.0  
 gi|34540835|ref|NP_905314.1|  hypothetical protein PG1102 [P...   288   7e-76
 gi|29349289|ref|NP_812792.1|  hypothetical protein BT_3881 [...    84   3e-14


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
signalp [1-20]? NA signalp signal-peptide signal-peptide
tmhmm [5-25]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
Residues 134-747 are 30% similar to PG0981, a hypothetical protein.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
17

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MRKPIVRFLLSFFWLLGVCASHMVGQSLPSVSKEIRELSNRTEQQTSLSD
RKESEAFALETVRMISDRTLYLFRLAEGRSWEADVRGRSWASRVLPIVHR
LKHGGIPWKQYLSSDSLCMEARLYGKYDSVTGAYRRGVVSFRSDIPQRNK
VDDLTALALLGENVYAEEFDFGNRQIFPNPIRREAEAFYTYRLDSLYEKD
GITYRRIAFRGLSGLNHGTVTIDATHGQLAILEMRVMMKGVITESYRVEL
GEVEPGLFLPIGLSVVIDRNRLWASLHNGYSASISYPGEQLDKTVLPVYT
PTDSSRYRLPDELPVAPVWAVRSSFGREDSSTYWKNVVVGRDHTLHQHVP
WHRALAWGHKYRIGERWRLGNEGLVWALFYYNYADHLWLGQSLTAIYDMA
PGIRWEIKPGLYYVTKRRKAVWTLDSKLYYSPPQRGLLQLSAGHRSFDLY
STRERIDQLTDLMMELLNGQGPTTRYDDKFVRLTNSIDLLPKLNVETSVM
LAERNPLPHGETWSLFGGSITDILNISNADPDLPRIVPHHRLLEVRAKMT
FNPRPYYRYTADGFLIREGEGIRAPLLSLSYRGAFGMGRKSDARFHHLDL
SIQQRLVFSPASSLFYQLNVGGYFDRSVIYPSEYFFLKGGNAFWRFGDSM
EAAFQTLPPYTATADKHLILQTSYRASRLLVNFLPFVFLKTNDEALHFKA
RWDMVSRKPYLEMGYSESIGTLMQVGVFYGGYNFFYERGVAIRFTFNM

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGAAAACCGATCGTCCGCTTTTTGCTATCGTTCTTTTGGCTTCTCGG
AGTCTGCGCTTCTCATATGGTGGGGCAGTCATTACCTTCTGTATCGAAGG
AAATACGGGAGCTGAGCAATAGAACGGAGCAGCAGACCTCCCTGTCTGAC
AGAAAAGAATCCGAAGCTTTTGCCTTGGAAACGGTCAGAATGATTTCCGA
CAGAACGCTTTACCTCTTCCGTTTGGCTGAAGGCCGTAGTTGGGAGGCTG
ATGTTCGAGGTCGATCGTGGGCTTCTCGTGTGCTGCCGATAGTGCATCGG
CTCAAACACGGTGGTATTCCGTGGAAGCAGTATCTCTCGTCGGATTCTTT
GTGTATGGAAGCTCGGCTATATGGAAAATACGACTCGGTAACCGGGGCAT
ATAGAAGGGGTGTTGTTTCTTTTCGATCGGATATTCCTCAGCGAAACAAA
GTTGATGACCTTACGGCTTTGGCTCTGTTGGGAGAGAATGTATATGCCGA
AGAGTTCGATTTTGGCAACCGGCAAATTTTTCCCAATCCTATTCGACGAG
AGGCCGAAGCATTTTATACCTATCGTTTGGATAGCCTGTACGAAAAAGAC
GGCATAACATACCGTCGTATCGCATTTCGTGGATTGAGCGGTCTGAATCA
CGGGACGGTAACGATAGATGCCACACATGGACAGCTTGCGATATTGGAAA
TGCGAGTCATGATGAAAGGGGTGATCACAGAATCCTATAGGGTCGAATTG
GGAGAAGTAGAACCCGGTCTTTTCCTCCCGATCGGACTTTCTGTCGTCAT
CGACCGCAATCGTCTTTGGGCTTCGCTCCATAATGGCTATTCTGCTTCAA
TCTCATATCCAGGAGAGCAGCTCGATAAGACCGTGCTCCCCGTCTATACG
CCTACGGATAGCAGTCGCTACCGCTTGCCGGACGAATTGCCGGTCGCTCC
TGTTTGGGCTGTTCGCAGCAGCTTTGGGAGGGAGGATAGCTCGACGTATT
GGAAAAATGTGGTTGTCGGTCGAGATCATACCCTGCATCAGCATGTACCT
TGGCATCGCGCATTGGCTTGGGGACACAAGTATCGGATCGGTGAGCGTTG
GCGATTAGGCAATGAGGGATTGGTGTGGGCTTTGTTCTATTATAATTATG
CCGATCATCTTTGGCTGGGGCAGTCTCTGACGGCTATTTACGATATGGCT
CCCGGAATCCGTTGGGAGATAAAGCCCGGCCTTTATTATGTTACCAAACG
ACGCAAAGCCGTTTGGACTCTCGACAGCAAACTGTACTATTCTCCTCCGC
AAAGAGGGCTTTTGCAATTATCCGCAGGACATCGCTCTTTCGATTTGTAC
AGCACGCGCGAAAGAATAGACCAACTGACCGATCTGATGATGGAGCTGCT
CAACGGACAAGGCCCGACAACTCGCTACGATGATAAATTTGTCCGTCTGA
CCAATAGTATCGACCTATTGCCCAAACTCAATGTGGAGACAAGCGTGATG
CTGGCCGAGCGCAATCCTTTGCCGCATGGAGAGACGTGGAGTCTCTTCGG
TGGCAGTATTACCGATATTCTGAATATCAGCAATGCCGATCCCGATCTTC
CTCGCATAGTTCCTCATCACCGATTGCTGGAAGTACGAGCTAAGATGACA
TTCAATCCGCGTCCTTATTACCGTTATACGGCGGATGGATTTCTCATTCG
TGAGGGTGAGGGCATACGTGCTCCGCTCCTTTCTCTCTCTTATCGCGGAG
CTTTCGGGATGGGGCGTAAGTCCGATGCACGTTTCCACCACCTCGATTTG
AGCATACAGCAGCGGCTTGTCTTTTCACCGGCATCGTCACTGTTCTATCA
ATTGAATGTCGGAGGTTATTTCGATCGGTCGGTTATCTATCCGAGCGAGT
ACTTTTTTCTGAAAGGGGGTAATGCTTTTTGGCGATTCGGCGATAGCATG
GAAGCTGCTTTCCAGACACTGCCTCCCTATACGGCTACAGCCGACAAACA
CCTTATCCTTCAAACCAGCTACCGAGCTTCGCGCCTGCTGGTCAATTTCC
TGCCTTTCGTTTTCTTAAAGACCAACGACGAGGCCTTACATTTCAAAGCC
CGGTGGGATATGGTATCGAGAAAACCCTATCTGGAGATGGGTTATTCAGA
GAGTATCGGTACGCTGATGCAAGTCGGAGTATTCTATGGTGGCTACAATT
TCTTTTATGAAAGAGGAGTTGCCATCCGATTTACATTCAACATG

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