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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0014 IGR0017 IGR0019 IGR0015 IGR0016 IGR0018 PG0018 ychM, - PG0019 PG0019.1 PG0020 PG0021 PG0017 ISPg4, - PG0016 atoS,ntrB, - PG0014 PG0015 PG0018 ychM, - PG0019 PG0019.1 PG0020 PG0021 PG0017 ISPg4, - PG0016 atoS,ntrB, - PG0014 PG0015 Type: IS element, Name: ISPg4 - 7 PG0018 ychM, - PG0019 PG0019.1 PG0021 PG0017 ISPg4, - PG0016 atoS,ntrB, - PG0014 PG0015 PG0020


LANL Gene ID: PG0017

GenBank Locus Tag: PG0020

DNA Molecule Name:
1  

GenBank ID:
34539898

Gene Name:


Definition:
possible transcriptional regulator, MarR family

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
23522

Gene Stop:
24223

Gene Length:
702

Molecular Weight*:
26805

pI*:
6.90

Net Charge*:
-0.53

EC:
 

Functional Class:
Regulatory functions  

Gene Ontology:
Biological process
  GO:0006355    regulation of transcription, DNA-dependent

Cellular component
  GO:0005622    intracellular

Molecular function
  GO:0003700    transcription factor activity


Pathway: pathway table

Comment:
TIGR ID: PG0020

Proteomic Data: Proteomic Data Search
TIGR Annotationtranscriptional regulator, MarR family, GroupP (regulatory functions)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0020-1.560.072-5.940.038-0.140.36-5.940.038
LANLPG00170.340.020.910.05
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Two weak hits in gapped BLAST to transcriptional regulator proteins: residues 105-189 are 34% similar to a transcriptional regulator, MarR family, in Deinococcus radiodurans (AE001965); residues 98-195 are 30% similar to a putative marR-family transcriptonal regulator of Streptomyces coelicolor A3(2) (AL133423).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539898|ref|NP_904377.1|  transcriptional regulator, Mar...   451   e-125
 gi|124008346|ref|ZP_01693041.1|  transcriptional regulator, ...    85   4e-15
 gi|110639028|ref|YP_679237.1|  possible transcriptional regu...    71   4e-11
 gi|73537609|ref|YP_297976.1|  regulatory protein, MarR [Rals...    58   5e-07
 gi|116694745|ref|YP_728956.1|  transcriptional regulator, Ma...    56   2e-06


InterPro Summary:  InterProScan

InterPro
IPR000835
Family
Bacterial regulatory protein, MarR
PF01047 [90-159]T 1.69999922284051E-6 PF01047 MarR MarR
SM00347 [82-183]T 1.9E-6 SM00347 HTH_MARR HTH_MARR
PS50995 [65-195]T 0.0 PS50995 HTH_MARR_2 HTH_MARR_2
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10 [90-163]T 6.09999977126217E-9 G3DSA:1.10.10.10 Wing_hlx_DNA_bd Wing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
SSF46785 [63-207]T 5.999999999999999E-20 SSF46785 SSF46785 SSF46785


COGS Summary:  COGS Search
BeTs to 5 clades of COG1846
COG name: Transcriptional regulators, MarR/EmrR family
Functional Class: K
The phylogenetic pattern of COG1846 is amtk--V-EBR----------
Number of proteins in this genome belonging to this COG is 2
Blocks Summary:  Blocks Search
***** IPB000835 (Bacterial regulatory protein, MarR family) with a combined E-value of 4.3e-08.
    IPB000835    123-156


 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 90 to 193 (E-value = 4.1e-09) place PG0017 in the MarR family which is described as MarR family (PF01047)

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MKYKKLLFDLIDYLDAFESLHDGGSHEPEIKDFADFLSWRCGKKKKQEEE
VVSVTRERAAGAKNIARGVSLLHRYSRFYIKKALTESPLQTEDEYTYLVS
LMNGESMTKTELNNLNAMEKTSGAEVMRRLLKANLIEQRPDEEDRRSMRV
SITPEGRKVLVNLFPNLRLCAETLVSALSDEQLTAFDHLLWLLCECHNEM
FTGKHDAELTDLHAETCGLKQSAGGALSKRLYRR

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAGTACAAAAAACTGCTTTTCGATCTTATTGACTACCTCGATGCATT
TGAAAGTTTGCACGACGGAGGCTCGCACGAACCCGAAATAAAAGACTTTG
CCGACTTTTTAAGTTGGCGCTGTGGCAAAAAGAAGAAACAGGAGGAAGAA
GTTGTCTCTGTCACCCGGGAACGAGCAGCAGGAGCTAAGAACATAGCGCG
AGGGGTCAGCCTCCTCCATCGTTATTCCCGTTTTTATATCAAGAAAGCTC
TGACGGAATCTCCATTACAGACCGAAGACGAATATACCTATCTGGTCAGC
CTGATGAACGGTGAGAGCATGACCAAGACAGAGCTGAACAACCTCAATGC
CATGGAAAAAACATCCGGCGCAGAAGTCATGCGTCGTCTGCTGAAAGCTA
ATCTGATCGAGCAGAGACCGGATGAGGAGGATCGCAGAAGTATGCGTGTC
TCCATTACCCCTGAGGGAAGAAAGGTACTGGTCAATCTCTTTCCCAACCT
GCGCCTTTGTGCCGAGACACTCGTTTCCGCCCTGTCGGACGAACAGCTGA
CCGCCTTCGATCATCTGCTCTGGTTGCTATGCGAATGCCACAACGAGATG
TTCACCGGCAAACATGATGCCGAGTTGACGGATTTGCATGCGGAGACCTG
TGGATTGAAGCAATCGGCAGGGGGAGCTTTGTCCAAGCGACTATACCGCC
GC

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