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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0017 IGR0019 IGR0020 IGR0015 IGR0016 IGR0018 PG0018 ychM, - PG0019 PG0019.1 PG0020 PG0021 PG0017 ISPg4, - PG0016 PG0015 PG0022 PG0018 ychM, - PG0019 PG0019.1 PG0020 PG0021 PG0017 ISPg4, - PG0016 PG0015 PG0022 Type: IS element, Name: ISPg4 - 7 PG0018 ychM, - PG0019 PG0019.1 PG0020 PG0021 PG0017 ISPg4, - PG0016 PG0015 PG0022


LANL Gene ID: PG0019

GenBank Locus Tag: PG0022

DNA Molecule Name:
1  

GenBank ID:
34539900

Gene Name:
ychM  

Definition:
sulfate transporter

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
26886

Gene Stop:
25213

Gene Length:
1674

Molecular Weight*:
59659

pI*:
6.50

Net Charge*:
-2.66

EC:
 

Functional Class:
Transport and binding; Anions  

Gene Ontology:
Biological process
  GO:0006810    transport
  GO:0008272    sulfate transport

Cellular component
  GO:0016020    membrane
  GO:0016021    integral to membrane

Molecular function
  GO:0005215    transporter activity
  GO:0008271    sulfate porter activity


Pathway: pathway table

Comment:
In contrast to CT856, this protein has no predicted transmembrane spanning domains.

TIGR ID: PG0022

Proteomic Data: Proteomic Data Search
TIGR Annotationsulfate permease family protein, GroupS (transport and binding proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00220.750.0960.870.12-0.070.360.870.12
LANLPG00191.681.830.962.27
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous significant hits in gapped BLAST to hypothetical proteins and sulfate transporters; e.g. residues 6-554 are 40% similar to a sulfate transporter in Chlamydophila pneumoniae (AE001682), residues 8-554 are 40% similar to a sulfate transporter in Chlamydia trachomatis (AE001358), residues 14-539 are 40% similar to a hypothetical protein in Bacillus subtilis (Z94043).

This protein is similar to CT856, a predicted sulphate transporter protein, and to BT3181.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539900|ref|NP_904379.1|  sulfate permease family protei...   981   0.0  
 gi|154493336|ref|ZP_02032656.1|  hypothetical protein PARMER...   681   0.0  
 gi|150009618|ref|YP_001304361.1|  putative sulfate transport...   671   0.0  
 gi|150003708|ref|YP_001298452.1|  putative sulfate transport...   660   0.0  
 gi|156109921|gb|EDO11666.1|  hypothetical protein BACOVA_028...   652   0.0  
 gi|156862384|gb|EDO55815.1|  hypothetical protein BACUNI_004...   642   0.0  
 gi|153807111|ref|ZP_01959779.1|  hypothetical protein BACCAC...   639   0.0  
 gi|29348590|ref|NP_812093.1|  putative sulfate transporter, ...   634   e-180
 gi|60679616|ref|YP_209760.1|  putative sulfate permease tran...   627   e-178
 gi|53711311|ref|YP_097303.1|  putative sulfate transporter p...   626   e-177


InterPro Summary:  InterProScan

InterPro
IPR001902
Family
Sulphate anion transporter
TIGR00815 [8-547]T 3.55818557810031E-122 TIGR00815 sulP sulP
InterPro
IPR002645
Domain
Sulfate transporter/antisigma-factor antagonist STAS
G3DSA:3.30.750.24 [438-554]T 7.89999609889426E-8 G3DSA:3.30.750.24 STAS STAS
PF01740 [441-547]T 1.09999909120792E-13 PF01740 STAS STAS
PS50801 [440-551]T 0.0 PS50801 STAS STAS
SSF52091 [439-552]T 2.0E-20 SSF52091 STAS STAS
InterPro
IPR011547
Domain
Sulphate transporter
PF00916 [112-416]T 7.299941788627591E-82 PF00916 Sulfate_transp Sulfate_transp
noIPR
unintegrated
unintegrated
PTHR11814 [17-557]T 0.0 PTHR11814 PTHR11814 PTHR11814
PTHR11814:SF6 [17-557]T 0.0 PTHR11814:SF6 PTHR11814:SF6 PTHR11814:SF6
SSF103473 [98-200]T 0.0086 SSF103473 SSF103473 SSF103473


COGS Summary:  COGS Search
BeTs to 8 clades of COG0659
COG name: Sulfate permease and related transporters (MFS superfamily)
Functional Class: P
The phylogenetic pattern of COG0659 is ----Yq-CeBR-uj----in-
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB001902 (Sulfate transporter) with a combined E-value of 4.4e-38.
    IPB001902B    37-87
    IPB001902C    100-151
    IPB001902D    269-321
***** PF01740 (SpoIIAA family) with a combined E-value of 1.1e-06.
    PF01740B    481-531


 ProDom Summary:  Protein Domain Search
Residues 175-325 are 46% similar to a (SULFATE PROTEIN TRANSPORTER TRANSPORT) protein domain (PD001255 which is seen in O06984_BACSU.

Residues 20-145 are 50% similar to a (SULFATE PROTEIN TRANSPORTER TRANSPORT) protein domain (PD001121 which is seen in O06984_BACSU.

Residues 445-540 are 35% similar to a (PROTEIN SULFATE TRANSPORTER) protein domain (PD155176 which is seen in Q9Z6P5_BBBBB.


Paralogs:  Local Blast Search
Residues 93-421 are 23% similar to PG0835, a conserved hypothetical protein (possible sulfate permease).

Pfam Summary:  Pfam Search
Residues 23 to 403 (E-value = 4.2e-05) place PG0019 in the Xan_ur_permease family which is described as Permease family (PF00860)
Residues 112 to 416 (E-value = 1.5e-83) place PG0019 in the Sulfate_transp family which is described as Sulfate transporter family (PF00916)
Residues 441 to 547 (E-value = 1.3e-15) place PG0019 in the STAS family which is described as STAS domain (PF01740)

 Structural Feature(s):
Feature Type  Start  Stop
non-globular  
1  
162
transmembrane  
30  
46
transmembrane  
54  
70
transmembrane  
75  
91
transmembrane  
98  
114
transmembrane  
124  
140
transmembrane  
176  
192
transmembrane  
202  
218
transmembrane  
258  
274
non-globular  
275  
439
transmembrane  
289  
305
transmembrane  
326  
342
transmembrane  
345  
361
transmembrane  
380  
396
transmembrane  
397  
413

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MIGSYFRPKLLDVFHGYNRERFMADLMAGVIVGIVALPLAIAFGIASGVS
PETGLITAIIGGFIVSLLGGSSVQIGGPTGAFIVIVYGIIHKYGIEGLTI
ATIIAGILLLVMGVLRLGTLIKFIPYPIVVGFTAGIALTIFSTQMNDLFG
LGITDMPGDFLGKWGAYFTNFKSVNLWAFGMGLLSIVIIMLSPRFTKKIP
GSLIAIILMTVAAYLLRLQGIGEFETIGDRFTISAQLPKPTGVTLSLETI
RQLFPPAFTIALLGAIESLLSASVADGVIGEKHNSNTELIAQGAANIVVP
FFGGIPVTGAIARTMTNINNGGRSPIAGIIHAFVLLLILLFLGPLTAYIP
MACLAGVLIIVSYNMSGWRSVANIGRGPRSDSLVMLVTFLLTVILDLTVA
IEIGLLLAILLFMKRVTENTRITVATGRLDLTQTGEIAHHDEVLDIPKGV
EVYEIEGPFFFGIANRFEEIMNTLGDHPDVRIIRMRHVPFMDSTGMHNLE
NLIKMSRKEGVSIVLSGVRKDVHEELATAGIVELLGEENVCADIQAALRQ
AQAIAQGA

Gene Nucleotide Sequence:  Sequence Viewer
ATGATCGGATCATATTTCAGGCCGAAGCTGCTCGATGTTTTCCACGGGTA
CAACCGTGAGCGTTTCATGGCCGACCTCATGGCCGGCGTTATCGTCGGCA
TCGTAGCTTTACCCTTGGCCATTGCCTTCGGTATAGCCAGTGGTGTATCT
CCGGAAACAGGTCTTATCACGGCCATTATAGGCGGTTTCATCGTATCGCT
TCTGGGTGGTTCATCCGTCCAAATCGGTGGCCCGACAGGTGCTTTCATCG
TTATCGTCTACGGCATCATTCATAAGTACGGCATCGAGGGTCTTACGATT
GCCACGATCATAGCAGGTATCTTGCTTCTCGTAATGGGTGTTCTTCGTCT
GGGCACGCTGATCAAGTTTATCCCCTACCCTATAGTAGTGGGATTCACGG
CAGGGATCGCCCTCACGATCTTCTCTACCCAAATGAATGACCTCTTCGGC
CTCGGTATTACGGATATGCCCGGTGATTTCCTTGGCAAATGGGGAGCTTA
TTTTACCAACTTCAAGTCAGTAAACCTTTGGGCTTTCGGGATGGGTCTGC
TTAGTATTGTCATCATTATGCTGAGTCCGAGATTCACCAAGAAGATACCC
GGTTCGCTCATTGCTATCATCTTGATGACCGTAGCAGCCTATTTACTTCG
GTTGCAGGGTATCGGCGAGTTCGAAACCATCGGCGACCGCTTCACTATTT
CCGCTCAACTGCCCAAACCAACGGGGGTAACACTCAGCCTCGAAACGATT
CGCCAACTTTTTCCTCCGGCTTTTACCATCGCCCTGTTGGGAGCTATCGA
ATCTCTGCTGTCAGCCAGCGTAGCCGATGGTGTGATAGGGGAAAAGCACA
ACAGCAATACCGAGCTTATCGCTCAGGGTGCGGCCAATATAGTGGTTCCG
TTCTTCGGTGGTATTCCCGTCACCGGAGCCATAGCGCGTACGATGACCAA
CATCAACAACGGCGGACGCTCTCCCATTGCAGGGATCATACACGCCTTCG
TGTTACTGCTGATCCTGCTGTTCCTCGGGCCTCTGACGGCATACATCCCG
ATGGCTTGTTTGGCCGGAGTACTGATCATAGTATCCTACAATATGAGCGG
ATGGCGTTCGGTGGCCAATATCGGTCGCGGCCCTCGCAGCGATAGCCTCG
TCATGCTGGTTACTTTCTTGCTTACCGTCATCCTCGACTTGACCGTTGCC
ATAGAGATAGGACTGCTTTTGGCCATCCTGCTCTTTATGAAGCGCGTTAC
GGAGAATACGCGTATCACCGTTGCCACAGGCAGGCTCGACCTGACACAAA
CCGGCGAGATCGCCCACCACGACGAAGTGCTCGACATTCCGAAGGGCGTA
GAGGTATATGAAATCGAAGGGCCTTTCTTCTTTGGTATCGCGAACAGATT
CGAAGAGATCATGAACACATTGGGCGACCATCCCGATGTTCGGATTATCA
GAATGCGGCATGTGCCGTTTATGGATTCGACAGGGATGCACAATCTGGAA
AACCTGATCAAAATGAGCCGGAAAGAAGGGGTCAGCATCGTCCTCTCCGG
TGTGCGCAAGGACGTCCACGAAGAACTTGCCACTGCAGGCATCGTAGAGC
TATTGGGAGAGGAAAACGTATGTGCCGATATTCAAGCGGCTCTGCGACAG
GCACAAGCCATAGCCCAAGGAGCA

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