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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Gln-1 IGR0022 IGR0027 IGR0025 IGR0019 IGR0021 IGR0023 IGR0020 IGR0026 IGR0024 PG0027 spoU, - PG0025 PG0028 PG0026.1 cdd, - PG0026 ispF, - PG0024 PG0020 PG0021 PG0023 PG0022 PG0027 spoU, - PG0025 PG0028 PG0026.1 cdd, - PG0026 ispF, - PG0024 PG0020 PG0021 PG0023 PG0022 PG0027 spoU, - PG0025 PG0028 cdd, - PG0026 ispF, - PG0024 PG0021 PG0023 PG0022 PG0026.1 PG0020


LANL Gene ID: PG0023

GenBank Locus Tag: PG0027

DNA Molecule Name:
1  

GenBank ID:
34539904

Gene Name:


Definition:
probable integral outer membrane protein P40

Cellular Location:
Outer membrane, Extracellular [Evidence]

Gene Start:
32821

Gene Stop:
33993

Gene Length:
1173

Molecular Weight*:
43255

pI*:
5.10

Net Charge*:
-6.78

EC:
 

Functional Class:
Cell envelope  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).

Comment:
Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: This protein is strongly predicted by PSORT to be located in the outer membrane. The presence of few Cys residues support this conclusion. The peptide mass data indicate that the mature N-terminus of this protein is pyroglutamate.

TIGR ID: PG0027

Proteomic Data: Proteomic Data Search
TIGR Annotationhypothetical protein, GroupK (hypothetical proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0027-1.000-1.081.6e-11-1.100-1.081.6e-11
LANLPG00230.500.470.470.44
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No significant hits in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539904|ref|NP_904383.1|  hypothetical protein PG0027 [P...   744   0.0  
 gi|150009173|ref|YP_001303916.1|  hypothetical protein BDI_2...   424   e-117
 gi|154494057|ref|ZP_02033377.1|  hypothetical protein PARMER...   409   e-112
 gi|150025453|ref|YP_001296279.1|  hypothetical protein FP138...   300   8e-80
 gi|124004965|ref|ZP_01689808.1|  conserved hypothetical prot...   296   1e-78
 gi|83856514|ref|ZP_00950043.1|  hypothetical protein CA2559_...   293   2e-77
 gi|126662325|ref|ZP_01733324.1|  hypothetical protein FBBAL3...   291   4e-77
 gi|124008750|ref|ZP_01693439.1|  conserved hypothetical prot...   291   7e-77
 gi|89890161|ref|ZP_01201672.1|  conserved hypothetical prote...   288   3e-76
 gi|88713262|ref|ZP_01107346.1|  hypothetical protein FB2170_...   288   3e-76


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
SSF56925 [204-352]T 3.5000000000000004E-6 SSF56925 SSF56925 SSF56925


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
26
gram negative signal  
1  
26

Top PDB Hits:
-64% similar to PDB:1MYR MYROSINASE FROM SINAPIS ALBA (E_value = );
-42% similar to PDB:2BHM CRYSTAL STRUCTURE OF VIRB8 FROM BRUCELLA SUIS (E_value = );

Gene Protein Sequence:
MIIKKMLKNKLAPLAILFLFAPKAMKAQEQLNVVHTSVPSLNISPDARAA
GMGDIGVATTPDAYSQYWNPSKYAFMDTKAGISFSYTPWLSKLVNDIALM
QMTGFYKLGTDENQAISASLRYFTLGKLETFDELGESMGEAHPNEFAVDL
GYSRQLSENFSMAVALRYIRSDQSTHNTGENQAGNAFAADIAGYLQKYVL
LGNAESLWSLGFNVKNIGTKISYDGGVTSFFIPTSLNLGTGLLYPIDDYN
SINFNLELSKLLVPTPPIMDQNDQAGYEAALKKYQETSSISGIFSSFGDA
PGGLKEEFREITWGLGAEYSYDDKFFVRAGYSYLHPTKGNLQYFTAGAGF
KMNIFRIDASYLLSTIQSNPLDQTLRFTLAFDMDGLRNLFH

Gene Nucleotide Sequence:  Sequence Viewer
ATGATTATCAAGAAAATGCTGAAAAATAAATTGGCCCCCTTGGCCATACT
GTTCCTTTTTGCTCCAAAGGCTATGAAGGCTCAGGAGCAACTGAATGTGG
TACACACCTCTGTGCCATCGCTGAATATCAGTCCGGATGCACGTGCGGCC
GGTATGGGGGATATAGGTGTGGCAACGACGCCGGATGCGTATTCACAGTA
TTGGAATCCGAGTAAATATGCTTTCATGGATACGAAAGCCGGTATTAGCT
TCTCATATACACCCTGGCTGTCCAAGCTGGTCAATGATATTGCCCTGATG
CAGATGACCGGTTTCTACAAATTGGGAACAGACGAGAATCAGGCTATTAG
TGCTTCTCTGCGTTATTTCACATTAGGAAAGTTGGAGACTTTCGACGAAT
TGGGCGAATCCATGGGAGAGGCCCATCCCAATGAATTTGCTGTCGATTTG
GGCTATAGCCGCCAGTTGTCGGAGAACTTCTCCATGGCTGTTGCACTGCG
TTACATCCGCTCAGACCAAAGCACTCACAACACCGGAGAGAATCAGGCCG
GAAATGCCTTTGCGGCGGATATAGCCGGTTATTTGCAGAAGTATGTGCTA
CTGGGTAATGCGGAGAGCTTGTGGTCGTTGGGTTTCAACGTAAAGAATAT
CGGAACGAAGATCTCCTATGACGGAGGTGTCACGAGTTTTTTCATCCCTA
CTTCGTTGAATCTCGGGACGGGGCTGTTGTATCCGATCGATGACTATAAC
AGCATCAATTTCAACCTTGAACTTAGCAAGCTGCTTGTACCCACTCCTCC
TATCATGGATCAAAACGATCAGGCCGGGTATGAGGCTGCACTCAAGAAAT
ATCAGGAAACTTCTTCGATCAGCGGTATATTCTCTTCTTTCGGTGATGCG
CCGGGAGGACTCAAGGAAGAATTCCGTGAGATTACATGGGGACTTGGGGC
TGAATATAGCTATGACGATAAATTTTTTGTTCGTGCCGGATATTCATACC
TGCACCCCACCAAAGGCAATTTGCAGTACTTCACGGCCGGTGCCGGCTTC
AAAATGAACATATTCCGTATCGATGCTTCCTACCTGTTGTCTACGATCCA
GAGTAATCCGTTGGATCAGACTCTGCGGTTTACGCTTGCTTTCGATATGG
ATGGATTGCGCAATTTGTTCCAC

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