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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Gln-1 IGR0028 IGR0027 IGR0030 IGR0025 IGR0023 IGR0026 IGR0024 IGR0029 trxA, - PG0030 PG0027 spoU, - PG0025 PG0029 PG0028 dnaE, - PG0031 PG0026.1 cdd, - PG0026 ispF, - PG0024 trxA, - PG0030 PG0027 spoU, - PG0025 PG0029 PG0028 dnaE, - PG0031 PG0026.1 cdd, - PG0026 ispF, - PG0024 trxA, - PG0030 PG0027 spoU, - PG0025 PG0029 PG0028 dnaE, - PG0031 cdd, - PG0026 ispF, - PG0024 PG0026.1


LANL Gene ID: PG0028

GenBank Locus Tag: PG0032

DNA Molecule Name:
1  

GenBank ID:
34539908

Gene Name:


Definition:
beta-mannosidase (mannanase)

Cellular Location:
Periplasm, Cytoplasm [Evidence]

Gene Start:
40302

Gene Stop:
37720

Gene Length:
2583

Molecular Weight*:
100495

pI*:
6.20

Net Charge*:
-8.84

EC:
3.2.1.25  

Functional Class:
Protein fate; Degradation of proteins, peptides and glycopeptides  

Gene Ontology:
Biological process
  GO:0005975    carbohydrate metabolic process

Molecular function
  GO:0003824    catalytic activity
  GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds
  GO:0043169    cation binding


Pathway: pathway table
Glycoprotein degradation

Comment:
TIGR ID: PG0032

Proteomic Data: Proteomic Data Search
TIGR Annotationbeta-mannosidase, putative, GroupC (cell envelope)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0032-0.250.2-1.250.0290.190.31-1.250.029
LANLPG00280.840.421.140.36
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous significant hits in gapped BLAST to beta-mannosidase e.g. residues 34-717 are 35% similar to the predicted beta-mannosidase, of Thermotoga maritima ((AE001806) and residues 32-845 are 30% similar to the putative beta-mannosidase of Streptomyces coelicolor (AL031514).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539908|ref|NP_904387.1|  beta-mannosidase, putative [Po...  1757   0.0  
 gi|53713022|ref|YP_099014.1|  beta-mannosidase [Bacteroides ...   786   0.0  
 gi|60681302|ref|YP_211446.1|  beta-mannosidase [Bacteroides ...   783   0.0  
 gi|156112053|gb|EDO13798.1|  hypothetical protein BACOVA_005...   776   0.0  
 gi|29345868|ref|NP_809371.1|  beta-mannosidase precursor [Ba...   773   0.0  
 gi|153806812|ref|ZP_01959480.1|  hypothetical protein BACCAC...   768   0.0  
 gi|126031140|pdb|2JE8|A  Chain A, Structure Of A Beta-Mannos...   768   0.0  
 gi|150006619|ref|YP_001301363.1|  glycoside hydrolase family...   731   0.0  
 gi|119773443|ref|YP_926183.1|  glycoside hydrolase family 2,...   620   e-175
 gi|109896459|ref|YP_659714.1|  glycoside hydrolase family 2,...   601   e-170


InterPro Summary:  InterProScan

InterPro
IPR006102
Domain
Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich
PF00703 [226-330]T 0.47000000414607096 PF00703 Glyco_hydro_2 Glyco_hydro_2
SSF49303 [222-330]T 5.3E-13 SSF49303 Glyco_hydro_2Ig Glyco_hydro_2Ig
InterPro
IPR006104
Domain
Glycoside hydrolase family 2, carbohydrate-binding
PF02837 [112-155]T 0.480000007407429 PF02837 Glyco_hydro_2_N Glyco_hydro_2_N
InterPro
IPR008979
Domain
Galactose-binding like
SSF49785 [10-220]T 5.3E-38 SSF49785 Gal_bind_like Gal_bind_like
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80 [347-588]T 4.799987227981039E-38 G3DSA:3.20.20.80 Glyco_hydro_cat Glyco_hydro_cat
noIPR
unintegrated
unintegrated
G3DSA:2.60.120.260 [34-155]T 9.200004346620609E-10 G3DSA:2.60.120.260 G3DSA:2.60.120.260 G3DSA:2.60.120.260
PTHR10066 [356-852]T 0.0 PTHR10066 PTHR10066 PTHR10066
PTHR10066:SF12 [356-852]T 0.0 PTHR10066:SF12 PTHR10066:SF12 PTHR10066:SF12
SSF51445 [339-676]T 1.7000000000000002E-66 SSF51445 SSF51445 SSF51445


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 34-337 are 26% similar to a (BETA-MANNOSIDASE PRECURSOR MANNANASE MANNASE HYDROLASE) protein domain (PD018561 which is seen in MANB_CAEEL.

Residues 494-675 are 38% similar to a (BETA-MANNOSIDASE PRECURSOR MANNANASE MANNASE HYDROLASE) protein domain (PD018562 which is seen in O86597_STRCO.

Residues 347-461 are 53% similar to a (BETA-MANNOSIDASE PRECURSOR MANNANASE MANNASE HYDROLASE) protein domain (PD014562 which is seen in MANB_BOVIN.


Paralogs:  Local Blast Search
Residues 196-477 are 22% similar to PG0598, a predicted beta-galactosidase.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
25

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MISKNTFRTFLLWLIPISITFQTQAAHTISADTLHLDKGWEFSRHDSTAW
LPATVPGVVQYDLIRHGLLPDPNYRLQEEQAQWPEEHDWDYRLLFSLTEQ
QLRSLRAILMAEGLDTYATVFLNGKKIMESHNMFVGREADITGLLRKSGN
ELLIRFRSPMKEVRPLRQRDGFDYPADNDHHNEKLSVYTRKAPYHYGWDW
GPRLVTTGVWRPVGIRFEGAVAFASKPEVTYTLTKDAQVNCLFPLSWNEQ
NDRSVRLVVELYSPNGRKVHSEELTAGYGQPSCRTSFTVLSPDRWMPNGI
GLPLMYTLVARLQDKDGTTWQTYRTQIGFRTVEFVREEDTHGRSFFFRIN
GKPLYMKGANYIPGTMMLSARTEEYWQELFRSVSEANMNMLRVWGGGIYE
DERFYELADANGILIWQDFAFACTPYPGDKEFLRNVREEADYNIRRLREH
PSLALWCGNNEIREGLKYWGWQKRSDRSTYQKFLTDYDKLFCRLLPERVA
ALDPTRAYVETSPDTANWGRPATLVWGDSHYWGVWYGREPFGILRERIPR
FMSEFGFESFPERKTLESFAWPEDMQLDSPVMKARQKSSVGNEIILEYMR
RDYPEPKDFDDFVFKSLIMQGQGMRIGLEAQRAAKPYCMGSLYWQLNDAW
PAISWSGIDYYGNWKPLHYQVRRAFEPVIIVPDAERRTISIVSDAPEAKG
EDRMALRIEPISFEGKRYPTFWVRNIEVDNEHPTVLPFPIEQWLPQELQR
TNLLRLSLVEDVGEAYGEVWASTLYYHHSPKDLLLPVAPPISQELRRTGL
RTWELTVRSPYLVKDLFVETDALGARFSDNAFDLLPNEERRLIITLPTDS
TEDPAIRLRHL

Gene Nucleotide Sequence:  Sequence Viewer
ATGATTAGCAAGAACACCTTCCGAACATTTCTCCTATGGTTGATCCCGAT
ATCCATAACCTTCCAAACCCAAGCGGCACATACCATTTCGGCCGACACAC
TCCATCTCGACAAGGGCTGGGAATTCAGCCGGCATGATAGCACGGCATGG
CTGCCGGCCACAGTGCCCGGAGTCGTGCAGTACGACCTTATCCGTCATGG
TTTGCTGCCCGATCCCAACTACAGACTTCAGGAGGAACAGGCACAATGGC
CGGAAGAGCACGACTGGGATTATCGGCTGCTCTTCTCCCTCACGGAACAG
CAACTCCGAAGCCTACGAGCCATCCTTATGGCAGAAGGACTGGACACCTA
TGCCACCGTATTCCTCAATGGGAAAAAGATAATGGAGAGCCACAATATGT
TTGTCGGCAGAGAAGCGGATATAACCGGTCTACTGCGAAAAAGCGGAAAC
GAACTGCTGATCCGCTTCCGCTCACCCATGAAGGAAGTACGCCCTCTGAG
ACAGCGCGATGGTTTCGACTACCCTGCAGACAACGATCACCACAACGAAA
AGCTAAGTGTATATACTCGAAAAGCACCCTACCACTATGGTTGGGACTGG
GGGCCTCGACTGGTAACCACAGGTGTTTGGCGACCTGTCGGCATACGTTT
CGAAGGGGCAGTAGCCTTCGCATCGAAACCGGAAGTCACCTACACGCTGA
CAAAAGATGCTCAGGTAAACTGTCTCTTTCCTCTCTCTTGGAACGAGCAG
AACGACCGCTCTGTCCGTTTGGTTGTGGAGCTGTACAGCCCGAACGGACG
GAAAGTGCACAGCGAAGAGCTGACGGCAGGCTATGGGCAACCTTCCTGTC
GCACCTCTTTCACCGTATTATCCCCCGATCGGTGGATGCCCAATGGGATA
GGCCTGCCCCTGATGTACACACTCGTTGCCCGTCTTCAGGACAAAGACGG
TACCACATGGCAGACCTACCGAACCCAAATAGGATTCCGAACCGTGGAAT
TCGTCCGTGAAGAGGATACCCACGGGCGCAGCTTCTTCTTCCGCATCAAC
GGAAAGCCGCTATACATGAAGGGAGCCAACTATATCCCCGGCACCATGAT
GCTGTCCGCACGCACGGAGGAGTATTGGCAGGAGCTTTTCCGCTCTGTCT
CGGAAGCGAATATGAATATGCTGCGCGTATGGGGAGGCGGTATATACGAG
GACGAACGTTTCTATGAGTTGGCGGATGCGAACGGGATTCTCATCTGGCA
AGATTTCGCTTTTGCTTGCACTCCCTATCCGGGCGACAAGGAATTCCTTC
GGAATGTGAGAGAAGAGGCCGATTACAACATCCGTCGATTGCGCGAACAT
CCGTCTTTGGCTCTCTGGTGCGGCAACAATGAAATACGAGAAGGCCTCAA
ATACTGGGGATGGCAAAAACGCTCCGACCGATCCACCTATCAGAAGTTTC
TCACGGACTACGACAAGCTGTTTTGCCGACTTCTGCCGGAGCGTGTGGCA
GCATTGGATCCCACACGCGCCTATGTAGAGACATCCCCCGACACGGCTAA
CTGGGGACGCCCAGCCACTTTGGTCTGGGGTGACAGCCACTACTGGGGAG
TATGGTACGGACGCGAACCATTCGGCATCCTGCGAGAGAGGATCCCGCGC
TTCATGAGCGAATTCGGATTTGAAAGTTTCCCCGAAAGAAAAACGTTGGA
GAGCTTTGCATGGCCGGAGGACATGCAGCTCGACTCCCCCGTCATGAAAG
CCAGACAGAAGAGCAGCGTGGGCAATGAGATTATACTCGAATATATGCGG
CGAGACTATCCCGAGCCAAAGGACTTCGATGATTTCGTATTCAAATCGCT
CATCATGCAGGGGCAAGGTATGCGCATCGGATTAGAAGCCCAACGAGCGG
CCAAACCCTACTGCATGGGTAGCCTCTACTGGCAACTCAACGATGCATGG
CCGGCCATCTCATGGTCCGGCATAGACTACTACGGGAACTGGAAACCGTT
GCACTATCAGGTACGCAGAGCTTTCGAACCCGTTATCATCGTTCCAGATG
CCGAACGGCGCACGATCAGCATCGTATCGGATGCTCCCGAAGCCAAAGGA
GAGGATCGGATGGCACTGCGCATCGAGCCGATCAGCTTCGAGGGGAAACG
CTATCCGACTTTTTGGGTGAGGAATATCGAAGTAGACAACGAACACCCCA
CCGTCCTGCCATTCCCGATCGAACAATGGCTGCCACAGGAATTGCAGCGA
ACGAACCTGCTTCGCCTGTCGCTTGTGGAGGATGTGGGAGAAGCATACGG
CGAAGTCTGGGCCTCCACGCTGTATTATCATCATTCGCCCAAGGATTTGC
TACTACCTGTGGCTCCTCCTATCTCGCAAGAGCTTCGCCGGACAGGCCTG
AGGACTTGGGAGCTGACAGTGCGGTCACCCTATTTGGTGAAGGATCTATT
TGTGGAAACGGATGCACTCGGAGCGCGATTCTCCGACAATGCTTTCGATT
TGCTCCCGAACGAAGAGCGCAGACTAATAATCACGCTGCCCACCGATAGT
ACGGAAGACCCGGCTATTCGTCTGCGACACTTA

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