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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0028 IGR0027 IGR0030 IGR0025 IGR0026 IGR0024 IGR0029 trxA, - PG0030 PG0027 PG0029 PG0028 dnaE, - PG0031 PG0026.1 cdd, - PG0026 trxA, - PG0030 PG0027 PG0029 PG0028 dnaE, - PG0031 PG0026.1 cdd, - PG0026 trxA, - PG0030 PG0027 PG0029 PG0028 dnaE, - PG0031 cdd, - PG0026 PG0026.1


LANL Gene ID: PG0029

GenBank Locus Tag: PG0033

DNA Molecule Name:
1  

GenBank ID:
34539909

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Cytoplasm, Inner membrane [Evidence]

Gene Start:
41630

Gene Stop:
40335

Gene Length:
1296

Molecular Weight*:
49674

pI*:
5.20

Net Charge*:
-10.57

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0033

Proteomic Data: Proteomic Data Search
TIGR Annotationconserved hypothetical protein, GroupJ (hypothetical proteins-Conserved)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0033-0.580.16-0.510.0922.450.039-0.510.092
LANLPG00290.670.705.4666.82
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous significant hits in gapped BLAST to conserved hypothetical proteins; e.g., residues 38-417 are 38% similar to a conserved hypothetical protein from Neisseria meningitidis (7227312), residues 19-421 are 35% similar to a conserved hypothetical protein (AE004535) from Pseudomonas aeruginosa, residues 9-417 are 32% similar to hypothetical protein (AE005614) from Escherichia coli (421110).

This protein is similar to CT825, a conserved hypothetical protein from Chlamydia trachomatis.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539909|ref|NP_904388.1|  RmuC domain protein [Porphyrom...   774   0.0  
 gi|156860872|gb|EDO54303.1|  hypothetical protein BACUNI_023...   305   3e-81
 gi|91201873|emb|CAJ74933.1|  conserved hypothetical protein ...   266   2e-69
 gi|145588321|ref|YP_001154918.1|  protein of unknown functio...   256   3e-66
 gi|83857684|ref|ZP_00951212.1|  DNA recombination protein Rm...   255   3e-66
 gi|87119359|ref|ZP_01075257.1|  hypothetical protein MED121_...   253   1e-65
 gi|146297834|ref|YP_001192425.1|  protein of unknown functio...   248   8e-64
 gi|86133626|ref|ZP_01052208.1|  hypothetical protein MED152_...   247   1e-63
 gi|152996902|ref|YP_001341737.1|  protein of unknown functio...   244   9e-63
 gi|89890810|ref|ZP_01202319.1|  DNA  recombination protein r...   243   2e-62


InterPro Summary:  InterProScan

InterPro
IPR003798
Domain
RmuC
PF02646 [109-420]T 5.899988094056821E-85 PF02646 RmuC RmuC


COGS Summary:  COGS Search
BeTs to 3 clades of COG1322
COG name: Uncharacterized BCR, YigN family
Functional Class: S
The phylogenetic pattern of COG1322 is --------e--h------inx
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 89-417 are 36% similar to a (PROTEIN YIGN FAMILY UDP-UBIE INTERGENIC REGION PRECURSOR) protein domain (PD041459 which is seen in YIGN_ECOLI.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 109 to 420 (E-value = 6.2e-88) place PG0029 in the RmuC family which is described as RmuC family (PF02646)

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable signal  
1  
13
transmembrane  
5  
21
coil-coil  
22  
77
coil-coil  
123  
168
coil-coil  
252  
280
coil-coil  
331  
398

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MDLYWLIIIVAIVAGLVVWLFHRRHNTETDRLTAQLEAATEKLADLQEEQ
KEAIRIRTELETRLQATTSELEREWKRSGQISEEMQALFKATASEILEDK
TRKLSGMNEERIGEILKPLSEHIKLFEEKVEKSYNEEARERFSLAKELQK
LIEQNSRLSDDANNLTRALKGDPKVQGDWGEMILENLLRRSGLTEGEEFF
IQETLTNDEGRTLLHDETGRRMRPDVIVRYPNGQEVIIDSKVSLTAYASF
VASEDEAERKRLLGEHIASISRHIEELASKSYQDYCDKAPEFVMLFIPNE
PAYTLALREKPTLWDQAYNKRVLLMNPTNLIAALRMALDLWQRDRQVKNV
QRIVEQANGLYDKFCTFAETLIRAEEQAQNTVATLAKARGQLVEGRSNIV
GRIEKMRSLGLSPKKNVPASFRPETEELPGNE

Gene Nucleotide Sequence:  Sequence Viewer
ATGGATTTGTACTGGCTAATCATCATCGTCGCAATAGTTGCCGGACTCGT
CGTATGGCTCTTCCATCGCAGGCACAACACTGAGACAGATAGGCTGACAG
CACAACTGGAGGCTGCCACTGAGAAGCTGGCGGATCTGCAAGAGGAGCAG
AAAGAAGCCATCCGTATTCGTACCGAACTGGAGACACGCTTGCAGGCAAC
CACTTCCGAATTGGAACGCGAATGGAAACGCTCCGGACAAATATCCGAAG
AGATGCAAGCACTCTTCAAGGCCACGGCATCGGAGATCCTCGAAGACAAG
ACACGGAAGCTTTCCGGAATGAACGAAGAGCGCATCGGTGAAATACTCAA
ACCGCTGAGTGAACACATCAAGCTATTCGAAGAAAAAGTCGAAAAGAGCT
ATAATGAAGAAGCGCGCGAACGTTTCTCTCTCGCCAAAGAGCTACAAAAG
CTCATCGAACAGAACAGCCGACTCAGCGATGATGCCAACAACCTGACCCG
TGCACTCAAAGGCGACCCCAAAGTACAGGGCGACTGGGGCGAAATGATCC
TCGAAAACCTGCTCCGACGCAGCGGCTTGACCGAAGGAGAAGAGTTCTTC
ATCCAAGAGACCCTGACCAATGATGAAGGGCGTACCCTCCTCCACGATGA
GACGGGCAGACGGATGCGTCCCGATGTGATCGTTCGCTACCCGAACGGTC
AGGAGGTGATCATCGACAGCAAGGTATCCCTTACGGCCTATGCCTCCTTC
GTTGCCTCTGAGGATGAAGCCGAGCGCAAACGACTGCTGGGGGAGCACAT
CGCCAGCATCAGCCGGCATATAGAGGAACTGGCAAGCAAAAGTTATCAGG
ACTATTGCGACAAAGCTCCCGAATTTGTGATGCTCTTCATCCCGAACGAA
CCGGCTTATACGCTGGCTCTGCGAGAAAAACCCACCTTATGGGATCAGGC
CTACAACAAACGCGTGCTGCTCATGAATCCGACCAACCTGATCGCAGCTT
TGCGGATGGCTCTGGATCTATGGCAGCGCGACCGGCAAGTGAAAAATGTG
CAGCGAATCGTAGAGCAAGCCAACGGGCTGTACGATAAGTTCTGCACTTT
CGCAGAGACACTCATTCGTGCCGAGGAACAAGCCCAAAATACGGTTGCCA
CGCTTGCCAAAGCCCGCGGTCAATTGGTCGAAGGCCGTAGCAACATCGTC
GGGCGTATCGAAAAGATGCGCAGCCTCGGACTTTCGCCCAAAAAGAATGT
ACCGGCATCGTTCCGTCCTGAGACGGAGGAGTTGCCGGGAAACGAA

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