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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0030 IGR0033 IGR0035 IGR0031 IGR0034 IGR0029 IGR0032 trxA, - PG0030 dnaE, - PG0031 rl19, - PG0032 ISPg5, - PG0033 ISPg5, - PG0034 glyA, - PG0035 PG0036 trxA, - PG0030 dnaE, - PG0031 rl19, - PG0032 ISPg5, - PG0033 ISPg5, - PG0034 glyA, - PG0035 PG0036 Type: IS element, Name: ISPg5 - 8 trxA, - PG0030 dnaE, - PG0031 rl19, - PG0032 ISPg5, - PG0033 ISPg5, - PG0034 glyA, - PG0035 PG0036


LANL Gene ID: PG0032

GenBank Locus Tag: PG0037

DNA Molecule Name:
1  

GenBank ID:
34539912

Gene Name:
rl19  

Definition:
50S ribosomal protein L19

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
46659

Gene Stop:
47021

Gene Length:
363

Molecular Weight*:
14072

pI*:
11.00

Net Charge*:
14.47

EC:
 

Functional Class:
Translation; Ribosomal proteins  

Gene Ontology:
Biological process
  GO:0006412    translation

Cellular component
  GO:0005622    intracellular
  GO:0005840    ribosome

Molecular function
  GO:0003735    structural constituent of ribosome


Pathway: pathway table

Comment:
TIGR ID: PG0037

Proteomic Data: Proteomic Data Search
TIGR Annotationribosomal protein L19, GroupN (protein synthesis)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00372.252.8e-122.041.5e-08-0.520.000712.041.5e-08
LANLPG00324.774.120.700.83
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous significant hits in gapped BLAST to ribosomal protein L19 sequences; e.g. residues 2-117 are 53% similar to the ribosomal protein L19 of Aquifex aeolicus (AE000765), residues 15-121 are 56% similar to the ribosomal protein L19 of Deinococcus radiodurans (AE001931), residues 18-114 are 59% similar to the ribosomal protein L19 of Streptococcus thermophilus (U88973).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539912|ref|NP_904391.1|  50S ribosomal protein L19 [Por...   198   6e-50
 gi|154494470|ref|ZP_02033790.1|  hypothetical protein PARMER...   165   6e-40
 gi|150008945|ref|YP_001303688.1|  50S ribosomal protein L19 ...   158   9e-38
 gi|150002754|ref|YP_001297498.1|  50S ribosomal protein L19 ...   155   6e-37
 gi|156862492|gb|EDO55923.1|  hypothetical protein BACUNI_003...   155   1e-36
 gi|29347899|ref|NP_811402.1|  50S ribosomal protein L19 [Bac...   154   1e-36
 gi|156111022|gb|EDO12767.1|  hypothetical protein BACOVA_015...   153   3e-36
 gi|53711854|ref|YP_097846.1|  50S ribosomal protein L19 [Bac...   152   7e-36
 gi|149278159|ref|ZP_01884297.1|  50S ribosomal protein L19 [...   124   1e-27
 gi|91214547|ref|ZP_01251520.1|  50S ribosomal protein L19 [P...   118   8e-26


InterPro Summary:  InterProScan

InterPro
IPR001857
Family
Ribosomal protein L19
PD002979 [23-101]T 0.0 PD002979 Ribosomal_L19 Ribosomal_L19
PR00061 [4-33]T 2.7E-31 PR00061 RIBOSOMALL19[34-63]T 2.7E-31 PR00061 RIBOSOMALL19[88-113]T 2.7E-31 PR00061 RIBOSOMALL19 RIBOSOMALL19
PTHR15680 [9-115]T 1.4000050690730899E-39 PTHR15680 Ribosomal_L19 Ribosomal_L19
PF01245 [1-114]T 2.5000090991620002E-40 PF01245 Ribosomal_L19 Ribosomal_L19
TIGR01024 [1-114]T 2.55789438809019E-41 TIGR01024 rplS_bact rplS_bact
PS01015 [86-101]T 8.0E-5 PS01015 RIBOSOMAL_L19 RIBOSOMAL_L19


COGS Summary:  COGS Search
BeTs to 12 clades of COG0335
COG name: Ribosomal protein L19
Functional Class: J
The phylogenetic pattern of COG0335 is ----yqvcebrhujgpolinx
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB001857 (Ribosomal protein L19) with a combined E-value of 2.7e-43.
    IPB001857A    18-63
    IPB001857B    74-112


 ProDom Summary:  Protein Domain Search
Residues 4-112 are 56% similar to a (PROTEIN RIBOSOMAL L19 50S) protein domain (PD002979 which is seen in RL19_AQUAE.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 1 to 114 (E-value = 6.6e-42) place PG0032 in the Ribosomal_L19 family which is described as Ribosomal protein L19 (PF01245)

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
-72% similar to PDB:1NKW Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans (E_value = 1.9E_27);
-72% similar to PDB:1NWX COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 (E_value = 1.9E_27);
-72% similar to PDB:1NWY COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN (E_value = 1.9E_27);
-72% similar to PDB:1PNU Crystal Structure of a Streptomycin Dependent Ribosome from Escherichia Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNU, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT, MRNA, P-SITE TRNA, AND A-SITE TRNA ARE IN THE PDB FILE 1PNS. (E_value = 1.9E_27);
-72% similar to PDB:1PNY Crystal Structure of the Wild Type Ribosome from E. Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNY, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT IS IN THE PDB FILE 1PNX. (E_value = 1.9E_27);

Gene Protein Sequence:
MDFIKIVNEEFKSGKEHPKFNSGDTITVEYRIKEGNKERIQKYRGVVIRI
SGHGDKKRFTVRKISDGIGVERIFPIESPFIENITVEKYGKVRRAKLYYL
RGLTGKKARIKERRVALSSKD

Gene Nucleotide Sequence:  Sequence Viewer
ATGGATTTTATTAAAATCGTTAACGAAGAGTTCAAATCAGGGAAAGAACA
TCCCAAGTTTAACAGCGGTGACACCATCACTGTTGAATATCGTATCAAGG
AGGGTAACAAGGAGCGTATCCAGAAGTATCGCGGTGTAGTAATACGCATC
AGCGGCCACGGCGACAAGAAGCGATTCACTGTTCGCAAAATATCGGACGG
TATCGGTGTAGAGCGTATTTTCCCGATCGAAAGCCCTTTCATCGAAAACA
TTACCGTTGAGAAGTATGGTAAGGTACGTCGAGCCAAACTATATTACCTG
CGTGGCCTTACAGGCAAGAAAGCCCGTATCAAAGAGCGTCGCGTAGCTCT
TTCTTCTAAAGAC

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