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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0046 IGR0047 IGR0045 IGR0044 IGR0048 IGR0042 IGR0041 IGR0043 PG0051 nadD,yqeJ, - PG0050 ISPg1, - PG0044 PG0047 pncB, - PG0049 PG0045 yngK, - PG0052 PG0048 recJ, - PG0046 PG0051 nadD,yqeJ, - PG0050 ISPg1, - PG0044 PG0047 pncB, - PG0049 PG0045 yngK, - PG0052 PG0048 recJ, - PG0046 Type: IS element, Name: ISPg1 fragment - 3 nadD,yqeJ, - PG0050 ISPg1, - PG0044 PG0047 pncB, - PG0049 PG0045 yngK, - PG0052 PG0048 recJ, - PG0046 PG0051


LANL Gene ID: PG0047

GenBank Locus Tag: PG0055

DNA Molecule Name:
1  

GenBank ID:
34539927

Gene Name:


Definition:
possible stress-related transcriptional regulator

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
66956

Gene Stop:
68008

Gene Length:
1053

Molecular Weight*:
38872

pI*:
6.80

Net Charge*:
-1.10

EC:
 

Functional Class:
Regulatory functions  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0055

Proteomic Data: Proteomic Data Search
TIGR Annotationconserved domain protein, GroupJ (hypothetical proteins-Conserved)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00551.970.014.105.6e-074.261e-054.105.6e-07
LANLPG00473.9217.2019.11216.47
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No significant hits in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539927|ref|NP_904406.1|  hypothetical protein PG0055 [P...   686   0.0  
 gi|150009348|ref|YP_001304091.1|  hypothetical protein BDI_2...   153   2e-35
 gi|60682108|ref|YP_212252.1|  hypothetical protein BF2629 [B...   152   3e-35
 gi|53713899|ref|YP_099891.1|  hypothetical protein BF2607 [B...   152   3e-35
 gi|153806665|ref|ZP_01959333.1|  hypothetical protein BACCAC...   145   4e-33
 gi|150005295|ref|YP_001300039.1|  hypothetical protein BVU_2...   140   2e-31
 gi|29345993|ref|NP_809496.1|  hypothetical protein BT_0583 [...   136   2e-30
 gi|156108507|gb|EDO10252.1|  hypothetical protein BACOVA_036...   136   2e-30
 gi|156862278|gb|EDO55709.1|  hypothetical protein BACUNI_005...   127   9e-28
 gi|154490396|ref|ZP_02030657.1|  hypothetical protein PARMER...   126   2e-27


InterPro Summary:  InterProScan

InterPro
IPR007168
Domain
PspC
PF04024 [122-186]T 5.0999988243997795E-5 PF04024 PspC PspC


COGS Summary:  COGS Search
BeTs to 3 clades of COG1983
COG name: Putative stress-responsive transcriptional regulator PspC
Functional Class: K,T
The phylogenetic pattern of COG1983 is ---k--v-eb-----------
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 122 to 186 (E-value = 1.7e-08) place PG0047 in the PspC family which is described as PspC domain (PF04024)

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
133  
150
transmembrane  
155  
179
transmembrane  
155  
171
transmembrane  
229  
253
transmembrane  
233  
249
transmembrane  
272  
295
transmembrane  
283  
299
transmembrane  
316  
338
transmembrane  
320  
336

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MKKTLTMNLGGKVFHIDEDAYNLLEEYLHNLASHFDRENHTDCKTIEEFE
AYLSDMMVVRLHSEHAVISIGLIREVIEKINTGEHFSSNEDSTTAGYSAG
AGYSQKERETSGYRYMSGEAPKRKFYRDMDHAVLCGVCSGIAAYTRWNVN
AIRVIVVLMTILASPLFWMIIIGYLAVWMIAPPAITASQKLEMYGEPITV
ENIGKRVAADVDTGLHRRNASVLNTLGCVLKGLFVLVGIGLILAVVFGLF
GLILELFADGYVAHAPLTSDWISIPSWMILCATISVFIIVAVPVMAIVFR
HQGQGRNGIIPAGLKWLGLTIWLAAAVLLAVVFILITRELGLNFFLHRHS
V

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAAAAAACGCTCACGATGAATCTGGGAGGCAAGGTCTTCCACATCGA
CGAGGATGCCTATAACCTGCTGGAGGAGTATCTGCACAATTTAGCCTCAC
ATTTCGATCGGGAGAACCATACGGATTGTAAGACGATCGAGGAATTCGAA
GCCTACTTGTCCGACATGATGGTGGTGCGTTTGCATAGCGAACACGCCGT
AATAAGTATCGGCCTGATTCGTGAAGTCATAGAAAAGATCAATACGGGAG
AGCACTTTTCTTCCAATGAAGACAGTACGACTGCCGGATATTCTGCAGGG
GCCGGTTACAGTCAGAAGGAGAGAGAAACTTCAGGCTATCGATACATGTC
CGGGGAGGCTCCGAAGCGGAAGTTTTATCGCGACATGGATCATGCCGTTT
TGTGTGGCGTGTGTAGCGGTATTGCTGCATATACGAGATGGAATGTGAAT
GCTATCCGTGTGATAGTCGTGTTGATGACGATTTTGGCTTCTCCGCTCTT
TTGGATGATCATTATCGGTTATTTGGCCGTTTGGATGATAGCTCCACCGG
CTATAACTGCTTCTCAGAAATTGGAGATGTATGGCGAGCCGATCACGGTA
GAGAATATCGGTAAGCGAGTTGCTGCCGATGTCGATACCGGCCTTCACCG
CAGGAATGCTTCTGTACTGAACACGCTGGGGTGTGTACTCAAAGGACTGT
TCGTCCTCGTAGGAATAGGTCTTATCCTTGCTGTCGTTTTCGGTCTTTTC
GGCCTTATATTAGAGCTGTTTGCAGACGGTTACGTGGCACATGCTCCTTT
GACTTCGGACTGGATTTCTATTCCTTCTTGGATGATACTCTGTGCCACGA
TCTCCGTATTTATTATAGTAGCCGTCCCGGTTATGGCCATCGTTTTCAGA
CATCAAGGGCAGGGGAGAAACGGGATTATTCCTGCAGGTCTCAAATGGCT
GGGCTTGACCATTTGGCTTGCTGCCGCTGTCCTATTGGCCGTAGTCTTCA
TATTGATAACCCGTGAACTGGGTTTGAATTTCTTCCTCCATCGCCATTCA
GTA

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