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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0046 IGR0049 IGR0047 IGR0045 IGR0044 IGR0048 IGR0043 PG0051 nadD,yqeJ, - PG0050 PG0047 pncB, - PG0049 PG0045 yngK, - PG0052 PG0048 recJ, - PG0046 PG0053 PG0051 nadD,yqeJ, - PG0050 PG0047 pncB, - PG0049 PG0045 yngK, - PG0052 PG0048 recJ, - PG0046 PG0053 PG0051 nadD,yqeJ, - PG0050 PG0047 pncB, - PG0049 PG0045 yngK, - PG0052 PG0048 recJ, - PG0046 PG0053


LANL Gene ID: PG0048

GenBank Locus Tag: PG0056

DNA Molecule Name:
1  

GenBank ID:
34539928

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Inner membrane, Outer membrane, Cytoplasm [Evidence]

Gene Start:
68142

Gene Stop:
69839

Gene Length:
1698

Molecular Weight*:
63997

pI*:
8.10

Net Charge*:
4.65

EC:
 

Functional Class:
Unknown  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293

Comment:
TIGR ID: PG0056

Proteomic Data: Proteomic Data Search
TIGR Annotationhypothetical protein, GroupK (hypothetical proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00560.660.000720.830.00310.270.0370.830.0031
LANLPG00481.581.781.211.47
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Matches weakly in gapped BLAST to 29348271 from Bacteroides thetaiotaomicron VPI-5482.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539928|ref|NP_904407.1|  hypothetical protein PG0056 [P...  1117   0.0


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
signalp [1-52]? NA signalp signal-peptide signal-peptide
tmhmm [32-50]? NA tmhmm transmembrane_regions[374-396]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs in P.gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
34  
50
coil-coil  
281  
308
non-globular  
309  
409
transmembrane  
375  
391
transmembrane  
392  
408
coil-coil  
410  
440
transmembrane  
505  
521

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MSDNCHLTEKSFRSVVLPKDSVLTLFFRICLRNWYWILLSIVLFAGWGVV
KYKRAGMAPSTYFTTVMARFPEGVQRACSGGLNPNYNVYDNYTPRWEGIS
VLDQNSIFNGLCATSLVERVGEKIQYDVNYYLPGKVTNHDFYDHTPIHLI
FSPESALSSFTVKMKVEKEHATILSLKGKHDGEKVSIKDIRLPYGISVAT
PIGELRVEKTPRFDYETSKKEFFSKPIIIVTKESKDKARVLYDSGLRTEE
FKGRIEMRITIKRSLGFARDFLDGIIEEFDIQSREKYRQEVEEKIALAEK
SLSDLQKSEGPVSDSTLVSLGITEKERNADSEALRKKLVSMINEYKVDLL
TADASSSLIVLDKTKSVPVSKKDLLILIINLVMGLFFPMIIFFVYIILRN
LILVPSELGEKALKRILALLNGNKKRAATMQRDIDLLRLNLTEYLPDSAS
SCIILTGMSGNEQTERIATELVSSFEKKGKNFQILHLEESDAALKEMTAL
REKGISVFAIAPSVVRSALAVEVSFGADVSLLLAESMHSKRNDKDEVEAF
ICQSRCPAFVLWLDRY

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGCGATAATTGTCATTTGACTGAGAAATCATTTCGAAGTGTTGTCCT
CCCGAAGGATTCCGTCCTGACTTTATTTTTCCGAATTTGTCTCCGAAACT
GGTATTGGATACTCCTTTCTATTGTCCTTTTCGCCGGATGGGGTGTGGTG
AAGTATAAGAGGGCCGGCATGGCTCCCAGCACCTATTTTACGACCGTAAT
GGCACGATTCCCCGAAGGCGTTCAGAGAGCATGCTCCGGTGGGTTGAATC
CAAACTACAATGTATATGATAATTATACGCCTCGTTGGGAAGGTATTTCT
GTATTAGATCAGAATTCTATTTTCAATGGTCTTTGTGCTACAAGTCTCGT
AGAAAGAGTGGGAGAGAAAATACAGTACGATGTGAATTATTATCTCCCGG
GCAAAGTGACCAATCATGATTTTTACGATCATACACCCATTCATTTGATC
TTTTCGCCGGAAAGTGCACTTAGTTCTTTCACTGTAAAGATGAAGGTGGA
AAAAGAGCATGCTACGATTCTCTCTTTGAAAGGAAAGCATGATGGAGAGA
AAGTAAGCATAAAGGATATTCGGCTTCCTTATGGTATTTCTGTGGCTACT
CCGATCGGGGAACTTAGGGTGGAGAAAACGCCACGATTCGACTATGAAAC
TTCGAAAAAAGAATTTTTTTCTAAGCCTATCATAATAGTTACTAAAGAAT
CAAAGGATAAGGCGCGAGTGCTTTACGATTCGGGGCTTAGAACCGAGGAG
TTCAAGGGCCGGATAGAAATGAGGATAACGATAAAGAGATCTTTAGGCTT
TGCCAGAGACTTTCTAGACGGAATTATAGAAGAATTCGATATCCAGTCTC
GCGAGAAATATCGTCAAGAGGTCGAAGAAAAAATCGCTTTAGCGGAAAAA
AGTCTAAGCGATCTTCAAAAGTCAGAGGGTCCTGTATCCGATTCTACTCT
TGTCTCTTTGGGAATCACAGAAAAGGAGAGGAATGCTGACAGTGAAGCTC
TACGGAAGAAGCTGGTGTCTATGATTAATGAATACAAAGTGGACCTTTTG
ACTGCTGATGCATCTTCGAGCCTGATTGTGTTGGACAAGACGAAGTCTGT
TCCAGTGTCGAAGAAAGACTTATTGATCTTGATTATCAATTTGGTTATGG
GGTTGTTTTTTCCCATGATTATCTTCTTTGTCTATATCATTCTTCGTAAT
CTCATATTGGTACCTTCGGAACTTGGAGAAAAAGCACTCAAGCGTATATT
AGCTCTATTGAATGGAAATAAGAAGAGAGCAGCCACGATGCAACGGGACA
TCGACTTGCTTCGTCTCAATCTGACTGAATACTTACCGGATTCGGCTTCC
TCTTGTATTATTCTGACAGGCATGAGCGGTAACGAACAGACCGAGAGGAT
CGCGACGGAATTGGTAAGTTCATTCGAGAAAAAGGGAAAGAATTTCCAAA
TTCTCCACCTTGAAGAATCGGACGCTGCACTCAAAGAGATGACTGCTTTG
CGTGAAAAGGGTATATCTGTTTTCGCTATTGCTCCGAGTGTAGTACGTAG
TGCTTTGGCTGTTGAAGTTAGCTTTGGGGCGGATGTTTCCTTGTTGTTGG
CTGAAAGTATGCACTCGAAGAGAAATGATAAAGACGAAGTTGAAGCATTT
ATCTGCCAAAGCCGCTGTCCTGCTTTTGTGCTATGGTTGGATAGGTAT

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