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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0046 IGR0049 IGR0047 IGR0045 IGR0050 IGR0044 IGR0048 PG0054 PG0051 nadD,yqeJ, - PG0050 PG0047 pncB, - PG0049 yngK, - PG0052 PG0048 recJ, - PG0046 PG0053 PG0054 PG0051 nadD,yqeJ, - PG0050 PG0047 pncB, - PG0049 yngK, - PG0052 PG0048 recJ, - PG0046 PG0053 PG0054 PG0051 nadD,yqeJ, - PG0050 pncB, - PG0049 yngK, - PG0052 PG0048 recJ, - PG0046 PG0053 PG0047


LANL Gene ID: PG0051

GenBank Locus Tag: PG0059

DNA Molecule Name:
1  

GenBank ID:
34539931

Gene Name:


Definition:
hypothetical protein

Cellular Location:
Cytoplasm, Inner membrane [Evidence]

Gene Start:
71666

Gene Stop:
72046

Gene Length:
381

Molecular Weight*:
14229

pI*:
4.50

Net Charge*:
-6.09

EC:
 

Functional Class:
Unknown; Hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0059

Proteomic Data: Proteomic Data Search
TIGR Annotationhypothetical protein, GroupK (hypothetical proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00593.070.00627.8302.190.00527.830
LANLPG00518.40227.254.558.25
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No significant hits in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539931|ref|NP_904410.1|  hypothetical protein PG0059 [P...   196   2e-49
 gi|150010373|ref|YP_001305116.1|  hypothetical protein BDI_3...    74   4e-12
 gi|154494176|ref|ZP_02033496.1|  hypothetical protein PARMER...    72   7e-12


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
tmhmm [106-126]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
107  
123
transmembrane  
108  
125

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MEEERMVTLVCLQSNALAEELQRMLAETGITAYLRNEYTNRIIGPMCDVG
GVRIELAESDLEAARIVLAESGLPLAEPEQTPVGRISRWADNLPLLRNRP
LEQRLWIITGLLLVFLGLLSIILYLLS

Gene Nucleotide Sequence:  Sequence Viewer
ATGGAAGAAGAAAGAATGGTCACGCTCGTCTGCCTGCAAAGCAATGCTTT
GGCAGAAGAACTCCAACGAATGCTTGCCGAGACAGGCATCACGGCCTATT
TGCGTAATGAATACACCAACCGTATCATAGGCCCTATGTGCGATGTCGGC
GGTGTGAGAATTGAATTGGCCGAAAGCGACCTCGAGGCTGCTCGTATTGT
TTTGGCGGAGTCCGGATTGCCATTGGCAGAACCGGAGCAGACCCCAGTAG
GGCGTATCAGCCGATGGGCAGACAACTTGCCTCTCCTGCGCAATCGTCCT
TTGGAACAACGGTTATGGATCATTACGGGACTGCTCCTGGTCTTTCTCGG
ACTGCTTTCCATCATACTCTATCTCTTAAGC

Los Alamos National Laboratory • Est 1943

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