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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0046 IGR0049 IGR0047 IGR0051 IGR0045 IGR0050 IGR0044 IGR0048 PG0054 czcA, - PG0055 PG0051 nadD,yqeJ, - PG0050 pncB, - PG0049 yngK, - PG0052 PG0048 PG0053 PG0054 czcA, - PG0055 PG0051 nadD,yqeJ, - PG0050 pncB, - PG0049 yngK, - PG0052 PG0048 PG0053 PG0054 czcA, - PG0055 PG0051 nadD,yqeJ, - PG0050 pncB, - PG0049 yngK, - PG0052 PG0048 PG0053


LANL Gene ID: PG0052

GenBank Locus Tag: PG0061

DNA Molecule Name:
1  

GenBank ID:
34539933

Gene Name:
yngK  

Definition:
YngK-related conserved hypothetical protein

Cellular Location:
Periplasm, Inner membrane, Cytoplasm [Evidence]

Gene Start:
72285

Gene Stop:
73820

Gene Length:
1536

Molecular Weight*:
59301

pI*:
10.20

Net Charge*:
23.02

EC:
 

Functional Class:
Uncategorized  

Gene Ontology:
Biological process
  GO:0006281    DNA repair

Molecular function
  GO:0003913    DNA photolyase activity


Pathway: pathway table

Comment:
TIGR ID: PG0061

Proteomic Data: Proteomic Data Search
TIGR AnnotationyngK protein, GroupT (unknown function)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0061-1.360.085
LANLPG00520.390.07
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
A few hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 4-506 are 53% similar to the uncharacterized yngK protein of B.subtilis (gb|AAF08799.1|AF184956_6). Residues 45-401 are 57% similar to a conserved hypothetical protein of S.coelicolor (AL031541).

This sequence is similar to BT1737.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539933|ref|NP_904412.1|  yngK protein [Porphyromonas gi...  1044   0.0  
 gi|154489852|ref|ZP_02030113.1|  hypothetical protein PARMER...   583   e-164
 gi|150009866|ref|YP_001304609.1|  putative secreted protein ...   582   e-164
 gi|156861659|gb|EDO55090.1|  hypothetical protein BACUNI_011...   517   e-145
 gi|156108342|gb|EDO10087.1|  hypothetical protein BACOVA_044...   516   e-144
 gi|53714605|ref|YP_100597.1|  putative secreted protein [Bac...   516   e-144
 gi|60682627|ref|YP_212771.1|  hypothetical protein BF3158 [B...   513   e-143
 gi|150002690|ref|YP_001297434.1|  putative secreted protein ...   511   e-143
 gi|29347147|ref|NP_810650.1|  conserved hypothetical protein...   509   e-142
 gi|153808456|ref|ZP_01961124.1|  hypothetical protein BACCAC...   509   e-142


InterPro Summary:  InterProScan

InterPro
IPR003790
Family
Protein of unknown function DUF187
PF02638 [4-411]T 2.9999875044572E-70 PF02638 DUF187 DUF187
InterPro
IPR006050
Domain
DNA photolyase, N-terminal
SSF52425 [327-454]T 0.018 SSF52425 DNA_photolyase_N DNA_photolyase_N
InterPro
IPR008957
Domain
Fibronectin, type III-like fold
SSF49265 [408-509]T 0.0033 SSF49265 FN_III-like FN_III-like
noIPR
unintegrated
unintegrated
PS51257 [1-25]T 0.0 PS51257 PROKAR_LIPOPROTEIN PROKAR_LIPOPROTEIN
SSF51445 [36-205]T 1.3E-8 SSF51445 SSF51445 SSF51445


COGS Summary:  COGS Search
BeTs to 3 clades of COG1649
COG name: Uncharacterized BCR
Functional Class: S
The phylogenetic pattern of COG1649 is -------Ceb-----------
Number of proteins in this genome belonging to this COG is 2
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 122-314 are 52% similar to a (PROTEIN OF SECTION YNGK) protein domain (PD024118 which is seen in O35015_BACSU.

Residues 42-115 are 44% similar to a (PROTEIN OF SECTION YNGK FROM BASES THE COMPLETE GENOME) protein domain (PD042721 which is seen in O35015_BACSU.


Paralogs:  Local Blast Search
Residues 14-315 are 30% similar to PG0435, a conserved hypothetical protein.

Pfam Summary:  Pfam Search
Residues 4 to 411 (E-value = 2.6e-73) place PG0052 in the DUF187 family which is described as Uncharacterized BCR, COG1649 (PF02638)

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
uncleavable signal  
1  
24
transmembrane  
9  
25

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MYHCSRKSLTFFLALLFCVMVLFSCGTKRKLPSQVHADYPKREFRAAWIQ
TVYQGEYARLSPAEARRLLIGRLDKLKEAGCNAIIFQIRPESDAWYESAI
EPWSRFLTGRQGQAPTPFWDPLAFMVSECHKRGMELHAWINPYRASTSGT
AGLAPNHPYHRYPQWFVTYNNQLYYDPGVPDCRAYICRIVRDITMRYDID
AIHMDDYFYPYPVAGAAFPDDDSFRRYGQGYTFQTKGDWRRENVNKLVHE
IKQTILQSKPWVRFGISPFGIYRNKRTSPSGSETAGLQNYDDLYADVLLW
QKRGWIDYVIPQIYWEIGHKAADYATLAEWWGRNSVGAAHLYFGQDVKRT
MTARQLASKMRMQRSVAVGHALWPAGEVVNNTEGVADSLRSRYHRYPALI
PAYTAMHRQAPPKVKGLHAAWLPSGFHLIWLAEKDESDPVKASYFVVYAF
RHGMKKTIQQAENIWVITPENSIRLPDSHASADYTYWVTAVDRFHNESKP
AKLKVKARYKRP

Gene Nucleotide Sequence:  Sequence Viewer
ATGTATCATTGTTCTCGTAAGTCTCTCACCTTTTTTCTTGCCTTGCTATT
TTGTGTTATGGTTCTTTTTAGCTGTGGCACCAAGCGAAAACTGCCTTCAC
AAGTCCACGCCGATTATCCCAAGCGGGAGTTCCGTGCAGCTTGGATCCAA
ACCGTCTATCAGGGAGAATACGCTCGTCTCTCTCCTGCCGAAGCACGTCG
TCTGCTGATCGGGAGGTTGGATAAACTCAAAGAAGCCGGCTGTAATGCGA
TCATTTTCCAGATCAGGCCCGAGAGCGATGCCTGGTACGAATCCGCTATA
GAGCCGTGGAGCCGTTTCCTGACAGGCCGACAGGGACAAGCCCCTACGCC
TTTTTGGGATCCACTGGCTTTTATGGTCAGCGAATGTCACAAGCGAGGGA
TGGAACTGCATGCGTGGATCAATCCATACAGGGCCTCGACTTCGGGAACA
GCAGGGCTTGCTCCCAACCATCCCTACCACCGTTATCCGCAATGGTTTGT
CACCTACAACAACCAACTCTATTATGATCCCGGCGTGCCGGATTGTAGGG
CCTATATCTGCCGTATTGTGCGAGATATTACGATGCGATATGACATCGAT
GCCATTCACATGGATGATTACTTCTATCCATATCCGGTAGCCGGTGCGGC
TTTTCCCGATGACGACAGTTTTCGACGATACGGACAGGGATATACCTTTC
AAACGAAGGGGGACTGGAGACGCGAGAATGTAAACAAGCTGGTGCATGAG
ATCAAACAGACCATACTGCAGTCAAAACCGTGGGTTCGTTTCGGAATCAG
TCCCTTCGGCATATATCGGAACAAACGCACCTCCCCCTCCGGTAGCGAGA
CGGCCGGACTTCAGAACTATGATGACCTCTATGCCGATGTGCTACTGTGG
CAAAAAAGAGGATGGATCGACTATGTTATCCCCCAAATCTATTGGGAGAT
CGGACACAAAGCCGCGGACTATGCCACGTTAGCTGAGTGGTGGGGGCGCA
ATTCTGTAGGAGCTGCGCATCTCTACTTCGGGCAAGATGTCAAACGAACG
ATGACCGCCCGACAACTGGCTTCCAAGATGCGGATGCAGCGATCCGTAGC
AGTGGGGCATGCTCTTTGGCCGGCAGGCGAGGTAGTGAACAATACCGAAG
GAGTGGCAGACAGCTTGCGTAGCCGTTACCACCGCTATCCCGCACTTATA
CCTGCTTATACGGCTATGCACCGACAGGCTCCTCCGAAAGTGAAAGGACT
GCATGCCGCTTGGTTGCCATCAGGTTTTCACCTGATTTGGCTTGCTGAAA
AGGATGAATCCGACCCTGTCAAAGCTTCCTACTTCGTGGTCTATGCCTTC
CGTCATGGCATGAAGAAAACGATCCAACAAGCTGAAAACATTTGGGTGAT
TACTCCCGAAAACAGCATTCGCCTTCCCGACTCCCATGCTTCAGCCGATT
ATACTTATTGGGTGACGGCCGTAGATCGCTTCCACAACGAGAGCAAACCG
GCCAAGCTGAAAGTCAAAGCCCGATACAAACGCCCC

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