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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0046 IGR0049 IGR0047 IGR0051 IGR0045 IGR0050 IGR0048 PG0054 czcA, - PG0055 PG0051 nadD,yqeJ, - PG0050 pncB, - PG0049 yngK, - PG0052 PG0053 PG0054 czcA, - PG0055 PG0051 nadD,yqeJ, - PG0050 pncB, - PG0049 yngK, - PG0052 PG0053 PG0054 czcA, - PG0055 PG0051 nadD,yqeJ, - PG0050 pncB, - PG0049 yngK, - PG0052 PG0053


LANL Gene ID: PG0053

GenBank Locus Tag: PG0062

DNA Molecule Name:
1  

GenBank ID:
34539934

Gene Name:


Definition:
helicase-related protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
73828

Gene Stop:
75867

Gene Length:
2040

Molecular Weight*:
77679

pI*:
6.20

Net Charge*:
-5.63

EC:
 

Functional Class:
DNA metabolism; DNA replication, recombination and repair  

Gene Ontology:
Molecular function
  GO:0000166    nucleotide binding
  GO:0005488    binding
  GO:0017111    nucleoside-triphosphatase activity


Pathway: pathway table

Comment:
TIGR ID: PG0062

Proteomic Data: Proteomic Data Search
TIGR AnnotationTPR domain protein, GroupT (unknown function)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0062-0.140.36
LANLPG00530.910.03
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Several hits in gapped BLAST to helicases and helicase homologs in eukaryotes: residues 4-466 are 46% similar to residues 296-792 of RRM3/PIF1 helicase homolog in yeast (AF074944).

This sequence is similar to BT4130.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539934|ref|NP_904413.1|  TPR domain protein [Porphyromo...  1299   0.0  
 gi|150008915|ref|YP_001303658.1|  putative helicase [Parabac...   619   e-175
 gi|154495172|ref|ZP_02034177.1|  hypothetical protein PARMER...   613   e-174
 gi|29349538|ref|NP_813041.1|  putative helicase [Bacteroides...   613   e-173
 gi|156107337|gb|EDO09082.1|  hypothetical protein BACOVA_049...   608   e-172
 gi|153807486|ref|ZP_01960154.1|  hypothetical protein BACCAC...   605   e-171
 gi|53712280|ref|YP_098272.1|  putative helicase [Bacteroides...   588   e-166
 gi|150004546|ref|YP_001299290.1|  putative helicase [Bactero...   561   e-158
 gi|156859317|gb|EDO52748.1|  hypothetical protein BACUNI_035...   402   e-110
 gi|126662716|ref|ZP_01733715.1|  helicase, putative [Flavoba...   366   3e-99


InterPro Summary:  InterProScan

InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515 [541-575]T 370.000047924442 PF00515 TPR_1[576-609]T 129.999995835434 PF00515 TPR_1 TPR_1
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382 [33-341]T 6.50000000000007E-5 SM00382 AAA AAA
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10 [466-679]T 1.2000011745814E-14 G3DSA:1.25.40.10 TPR-like_helical TPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028 [541-575]T 96.00000000000041 SM00028 TPR[576-609]T 9.10000000000001 SM00028 TPR[610-643]T 69.0000000000007 SM00028 TPR TPR
PS50005 [542-575]T 0.0 PS50005 TPR[576-609]T 0.0 PS50005 TPR[610-643]T 0.0 PS50005 TPR TPR
PS50293 [541-643]T 0.0 PS50293 TPR_REGION TPR_REGION
noIPR
unintegrated
unintegrated
PTHR23274 [1-479]T 1.2000011745814E-57 PTHR23274 PTHR23274 PTHR23274
SSF48452 [465-663]T 6.2E-19 SSF48452 SSF48452 SSF48452
SSF52540 [30-421]T 1.8000000000000002E-14 SSF52540 SSF52540 SSF52540


COGS Summary:  COGS Search
BeTs to 5 clades of COG0507
COG name: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Functional Class: L
The phylogenetic pattern of COG0507 is -m--Y---ebrh----o-IN-
Number of proteins in this genome belonging to this COG is 3
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 18-170 are 32% similar to a (PROTEIN HELICASE T2L5.8 T13P21.15 PUTATIVE C11G6.2) protein domain (PD092153 which is seen in Q17908_CAEEL.

Residues 20-173 are 36% similar to a (HELICASE PROTEIN ATP-BINDING DNA DNA-BINDING) protein domain (PD000627 which is seen in O74239_SCHPO.

Residues 301-425 are 37% similar to a (PROTEIN HELICASE PIF1 ATP-BINDING) protein domain (PD008646 which is seen in O61299_CAEEL.


Paralogs:  Local Blast Search
Residues 25-462 are 43% similar to PG1787, a helicase-related protein.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
516  
550
coil-coil  
616  
663

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MPRRKTKKREEGLSAIDLANEEMGYVLSLIERTDQSLFLTGKAGTGKSTL
LRHICATTHKKFVVLAPTGLAALNVGGQTLHSFFKLPLRPIPPNDPDLST
RDRRVFDVFRYTNEHKKLIRSLDLIIIDEVSMVRADVIDAIDKLLGIYRG
RQERPFGGVQMLFVGDLYQLEPVVTADDADILKRFYPNPFFFSSEALRAT
PPVTVELTKVYRQTEQAFVQILDRIRSGRLTEQDLQDINKCVNRHYEPPK
DEPVITLATKRRHVSYINERQLEQLQGDPVTLYGTIEGDFPSSSLPTEEE
LTLKQDAQVIFVSNDKDRRWVNGTLGIVAGFDQESETIDVCLSTGEVVTV
EPCIWDNKRFSYNEQANKVEEEVLGRFVQYPLKLAWAITVHKSQGLTFDR
VIIDFSEGTFAGGQAYVALSRCRSLEGMVLRAPLAGRDVIVRREIIDFYS
RANDLEIINGSLLRAEAEREYAQALRLWNARHYTEAIGAFSQALARKNEL
DDPLFRRLLVSKLFEMEYARRREEELRRELAEQREVMRRLAKEYVLMGND
CITEAHDAHAAIRCYDKALTLYPDYVEALVRKGKTLAGLNEITTSLSTLN
QAIAIAPMDFTARFTLGQVLEKFAYYEEALDAYRQADGLNSQSRSLLKRL
IALCEELDEEDEANLYRIRLRKNRDQTGHK

Gene Nucleotide Sequence:  Sequence Viewer
ATGCCTCGTCGCAAGACAAAAAAGAGAGAGGAGGGCCTGTCCGCAATCGA
CCTTGCCAATGAGGAGATGGGCTATGTGCTCAGCCTGATCGAACGCACAG
ACCAAAGCCTCTTCCTGACCGGCAAGGCCGGAACGGGTAAGTCCACACTG
CTTCGGCATATCTGTGCTACGACGCATAAGAAGTTTGTCGTGCTTGCGCC
TACCGGCCTTGCGGCACTGAATGTCGGAGGGCAGACGCTCCACTCGTTTT
TCAAACTGCCTCTTCGCCCGATTCCGCCGAACGATCCCGATTTGAGTACT
CGTGACAGACGGGTGTTCGATGTGTTTCGCTACACGAACGAACACAAGAA
ACTGATCCGAAGTCTCGATCTGATTATCATAGACGAGGTGTCCATGGTTC
GAGCGGATGTCATCGACGCCATCGATAAGCTCCTCGGTATATACAGAGGC
CGGCAAGAAAGGCCTTTCGGCGGTGTGCAGATGTTGTTCGTGGGAGATCT
TTATCAGCTTGAACCTGTGGTAACGGCAGATGATGCCGACATACTGAAAC
GATTTTATCCCAACCCCTTCTTTTTCTCTTCCGAGGCACTGCGAGCAACC
CCTCCCGTCACAGTGGAGCTGACCAAGGTGTATCGACAGACAGAGCAAGC
ATTCGTGCAGATACTCGATCGAATCCGATCGGGCAGGCTTACCGAACAGG
ATCTTCAGGACATCAATAAATGTGTCAATCGCCATTACGAGCCGCCGAAG
GACGAACCGGTCATCACACTTGCCACCAAACGCCGGCACGTGAGTTACAT
CAATGAGCGGCAATTGGAACAGCTGCAGGGCGACCCCGTCACCCTGTACG
GCACTATCGAAGGCGATTTTCCCTCCTCATCCTTGCCGACAGAGGAGGAA
CTTACACTGAAGCAGGATGCTCAGGTGATATTCGTCTCCAACGACAAAGA
TCGTCGATGGGTCAATGGAACACTCGGCATAGTAGCCGGTTTCGATCAGG
AGAGTGAAACGATAGATGTATGTCTCAGCACCGGAGAAGTTGTAACGGTG
GAACCATGCATCTGGGACAATAAACGCTTCTCCTATAATGAGCAAGCCAA
TAAAGTGGAGGAGGAAGTACTGGGAAGATTCGTTCAGTATCCGCTCAAAT
TGGCTTGGGCGATCACGGTACACAAGAGCCAGGGACTGACGTTCGATCGT
GTGATCATCGATTTCTCGGAAGGCACCTTTGCCGGCGGTCAGGCCTATGT
AGCTCTCAGCCGGTGTCGTTCGCTCGAAGGTATGGTGCTGCGTGCACCGC
TTGCCGGTCGGGATGTGATCGTCCGTCGTGAGATCATCGATTTTTATTCG
CGAGCCAATGATTTGGAGATCATCAATGGCTCACTCCTGCGTGCCGAAGC
AGAACGCGAGTATGCACAAGCCCTCCGACTGTGGAATGCTCGCCATTATA
CGGAAGCCATCGGTGCCTTTTCGCAGGCATTAGCGAGGAAGAACGAATTG
GACGACCCGCTCTTTCGTCGCCTGCTGGTGAGTAAGCTGTTCGAAATGGA
GTACGCACGCCGTCGCGAGGAAGAGCTGCGTCGCGAGTTGGCCGAGCAAC
GCGAGGTTATGCGTCGGCTGGCCAAAGAATATGTGCTGATGGGCAATGAC
TGTATCACAGAGGCTCATGATGCCCATGCTGCTATTCGCTGCTACGACAA
GGCCCTTACGCTCTACCCCGACTATGTGGAAGCCTTAGTCAGGAAAGGCA
AGACATTAGCCGGGCTGAATGAGATAACCACTTCCCTCTCCACCTTGAAC
CAAGCCATAGCCATTGCTCCGATGGACTTTACTGCCAGATTCACATTGGG
ACAAGTCTTGGAGAAATTCGCTTACTATGAAGAAGCCCTCGATGCGTACC
GACAAGCTGATGGACTCAACTCCCAAAGTCGCTCATTGCTCAAACGGCTC
ATTGCCCTCTGCGAGGAGCTGGACGAAGAAGACGAAGCCAATCTCTACCG
AATCCGCCTACGCAAAAACCGAGATCAGACCGGACATAAA

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