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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0049 IGR0047 IGR0051 IGR0052 IGR0050 IGR0048 IGR0053 czcB, - PG0056 PG0054 czcA, - PG0055 PG0051 nadD,yqeJ, - PG0050 yngK, - PG0052 PG0053 czcB, - PG0056 PG0054 czcA, - PG0055 PG0051 nadD,yqeJ, - PG0050 yngK, - PG0052 PG0053 czcB, - PG0056 PG0054 czcA, - PG0055 nadD,yqeJ, - PG0050 yngK, - PG0052 PG0053 PG0051


LANL Gene ID: PG0054

GenBank Locus Tag: PG0063

DNA Molecule Name:
1  

GenBank ID:
34539935

Gene Name:


Definition:
possible alkaline protease secretion protein

Cellular Location:
Outer membrane, Cytoplasm, Periplasm [Evidence]

Gene Start:
77146

Gene Stop:
75971

Gene Length:
1176

Molecular Weight*:
44183

pI*:
5.50

Net Charge*:
-3.57

EC:
 

Functional Class:
Uncategorized  

Gene Ontology:
Biological process
  GO:0006810    transport

Molecular function
  GO:0005215    transporter activity


Pathway: pathway table

Comment:
TIGR ID: PG0063

Proteomic Data: Proteomic Data Search
TIGR Annotationouter membrane efflux protein, GroupS (transport and binding proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0063-2.400.011-2.040.027-3.878.7e-10-2.040.027
LANLPG00540.190.240.070.21
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No strong hits in gapped BLAST, however PGoo54 is weakly related to APRF_PSEAE. When APRF_PSEAE is blasted against the Porgi genome, several weak hits are observed to PG proteins, in particular PG0054, PG1455, PG0611 and PG0083 (see paralogs). Residues 22-387 are 36% similar to APRF_PSEAE.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539935|ref|NP_904414.1|  outer membrane efflux protein ...   712   0.0  
 gi|53713382|ref|YP_099374.1|  outer membrane efflux protein ...   417   e-115
 gi|60681634|ref|YP_211778.1|  hypothetical protein BF2155 [B...   415   e-114
 gi|150008238|ref|YP_001302981.1|  hypothetical protein BDI_1...   201   9e-50
 gi|154492603|ref|ZP_02032229.1|  hypothetical protein PARMER...   197   7e-49
 gi|53715008|ref|YP_101000.1|  hypothetical protein BF3723 [B...   194   7e-48
 gi|153808888|ref|ZP_01961556.1|  hypothetical protein BACCAC...   194   1e-47
 gi|156111886|gb|EDO13631.1|  hypothetical protein BACOVA_006...   190   2e-46
 gi|29347450|ref|NP_810953.1|  hypothetical protein BT_2040 [...   190   2e-46
 gi|156861220|gb|EDO54651.1|  hypothetical protein BACUNI_016...   178   6e-43


InterPro Summary:  InterProScan

InterPro
IPR003423
Family
Outer membrane efflux protein
PF02321 [23-199]T 7.19999952919342 PF02321 OEP[219-392]T 1.49999977583351E-5 PF02321 OEP OEP
noIPR
unintegrated
unintegrated
SSF56954 [21-387]T 3.0000000000000004E-37 SSF56954 SSF56954 SSF56954


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis. Very weak similarity is noted to PG1455, PG0611 and PG0083, all of which in turn are weakly related to the alkaline protease secretion protein APRF (See BLAST).

Pfam Summary:  Pfam Search
Residues 219 to 392 (E-value = 4.4e-08) place PG0054 in the OEP family which is described as Outer membrane efflux protein (PF02321)

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
19
gram negative signal  
1  
19
coil-coil  
135  
186
non-globular  
218  
282
coil-coil  
290  
335

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MKAIFISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLN
NRTGIFLSNPEVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAK
MQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERRLRHARTIAE
GYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLERLNGG
KEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQQVALS
RAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAA
EMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALD
AGEISLLDYIVEMGLYYDTVSRAMEAERDYQQAFAELSAVDL

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAAGCAATCTTCATAAGCATATTGGCCTTTTTGGTGACTGCTCCCGT
TTGGGCACAAAACGGCATGAATGATGTACTGCATGCCATCGAAGAGAACA
ATACCGCGTTGAAAGCTCTTCGAGAGAGCACAGATGCAGAAAAACTGAAC
AACCGCACCGGAATATTCCTGTCCAATCCGGAAGTGGAGGTCGGCTACCT
ATGGGGAAACCCTGCGGAAATCGGCAATCGGACGGACTTCAGCATTACGC
AGAGTGTCGATATTCCTACTATCACGGGTATGAAGAGTCGTGCAGCCAAG
ATGCAAGACAAACTCTTGGACTGGCGATACAAAACGGATCGCATGAACAT
CCTGCTGGAGGCCAAGACTTGCTGTATCGAATTGATATACAACAAAGCCC
TTTTGCTCGAATTGGAGCGTCGGCTCCGACATGCCCGCACCATTGCCGAA
GGGTACGAAGCGCGCCTCAAAGCCGGTGATACCAACCAGTTGGAATACAA
CAAGATCAAGCTGAACCTCGCCTCCGTCGAAGGTGAAATATCCCGCGTGC
AGGTGGATCGAAAGGCTCTGCTCGTCCGGCTCGAGCGGTTGAACGGAGGC
AAAGAGATCGCATTCGACGAAAGCCGCTATACGGAGATCGTGCTACCGCA
GTCTTTCTCTGTATGGTTCGATCAGGTAGCGGAAAAGAATCCGCAGTTGG
CATATGCCCGAGAAGAGGTGGCCGCAAGCAAGCAGCAGGTAGCATTGAGC
CGAGCAGCAGGATTGCCGGTTTTCTCTGCCGGCTATGTAAGCGAGAAAGT
CGGGAGCGAAAGGTTTCAGGGAGTATCTTTCGGAATATCCGTGCCTCTGT
GGGAAAACAAAAACCGCGTCAAACAAGCGAAAGCTTCGGTCAGAGCCGCA
GAAATGCGTGAGACGGACAGTCGGCAGCAGCTATACAGCGAGCTTCAGCT
CCTGTACGAACGTGCCGCCGGGCTAAAGACCACGGCGGAAAATTATCGCA
GACTGCTGACGACCTCCGACAATGCCGACCTGCTCAAGAAAGCATTGGAT
GCAGGAGAGATCTCCTTGCTGGACTATATCGTCGAAATGGGACTCTACTA
CGATACCGTCAGTCGGGCGATGGAAGCCGAACGCGACTATCAACAGGCAT
TTGCCGAACTCTCAGCAGTCGATTTG

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