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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0055 IGR0057 IGR0052 IGR0054 IGR0056 IGR0053 PG0057 lpxA, - PG0059 pyrF,ura3, - PG0062 czcB, - PG0056 prfA, - PG0063 fabZ, - PG0060 PG0058 czcA, - PG0055 PG0057 lpxA, - PG0059 pyrF,ura3, - PG0062 czcB, - PG0056 prfA, - PG0063 fabZ, - PG0060 PG0058 czcA, - PG0055 PG0057 lpxA, - PG0059 czcB, - PG0056 prfA, - PG0063 fabZ, - PG0060 PG0058 czcA, - PG0055 firA,lpxD, - PG0061 firA,lpxD, - PG0061 pyrF,ura3, - PG0062


LANL Gene ID: PG0058

GenBank Locus Tag: PG0069

DNA Molecule Name:
1  

GenBank ID:
34539940

Gene Name:


Definition:
conserved hypothetical protein (possible sugar kinase)

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
84025

Gene Stop:
82514

Gene Length:
1512

Molecular Weight*:
54421

pI*:
5.70

Net Charge*:
-9.60

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0069

Proteomic Data: Proteomic Data Search
TIGR Annotationconserved hypothetical protein, GroupJ (hypothetical proteins-Conserved)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0069-1.512.3e-05-1.254.9e-05-1.315.7e-06-1.254.9e-05
LANLPG00580.350.420.400.39
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 4-502 are 31% similar to AE000736 of Aquifex aeolicus, residues 10-504 are 32% similar to the protein from Thermotoga maritima (AE001756).

This sequence is similar to BT4383.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539940|ref|NP_904419.1|  hypothetical protein PG0069 [P...  1014   0.0  
 gi|150008514|ref|YP_001303257.1|  putative sugar kinase [Par...   565   e-159
 gi|154495056|ref|ZP_02034061.1|  hypothetical protein PARMER...   561   e-158
 gi|153809269|ref|ZP_01961937.1|  hypothetical protein BACCAC...   506   e-141
 gi|29349791|ref|NP_813294.1|  putative sugar kinase [Bactero...   493   e-138
 gi|156107610|gb|EDO09355.1|  hypothetical protein BACOVA_052...   493   e-137
 gi|150004239|ref|YP_001298983.1|  putative sugar kinase [Bac...   489   e-136
 gi|53712380|ref|YP_098372.1|  putative sugar kinase [Bactero...   478   e-133
 gi|60680549|ref|YP_210693.1|  putative YjeF-related sugar ki...   478   e-133
 gi|156859229|gb|EDO52660.1|  hypothetical protein BACUNI_034...   470   e-130


InterPro Summary:  InterProScan

InterPro
IPR000631
Domain
Carbohydrate kinase
PF01256 [252-497]T 9.600041308841921E-38 PF01256 Carb_kinase Carb_kinase
TIGR00196 [225-501]T 2.38222482712812E-50 TIGR00196 yjeF_cterm yjeF_cterm
InterPro
IPR004443
Domain
YjeF-related protein, N-terminal
PF03853 [21-193]T 3.399999724376869E-24 PF03853 YjeF_N YjeF_N
TIGR00197 [3-215]T 1.23465298628675E-25 TIGR00197 yjeF_nterm yjeF_nterm
noIPR
unintegrated
unintegrated
G3DSA:3.40.1190.20 [223-503]T 5.39997012872503E-67 G3DSA:3.40.1190.20 G3DSA:3.40.1190.20 G3DSA:3.40.1190.20
G3DSA:3.40.50.10260 [4-210]T 6.99997659850716E-42 G3DSA:3.40.50.10260 G3DSA:3.40.50.10260 G3DSA:3.40.50.10260
PTHR12592 [4-504]T 6.1000265614980995E-65 PTHR12592 PTHR12592 PTHR12592
SSF53613 [224-503]T 5.3E-68 SSF53613 SSF53613 SSF53613
SSF64153 [2-251]T 1.3000000000000001E-52 SSF64153 SSF64153 SSF64153


COGS Summary:  COGS Search
BeTs to 12 clades of COG0063
COG name: Predicted sugar kinase
Functional Class: G
The phylogenetic pattern of COG0063 is amtkyqvcebr-uj-------
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB000631 (Uncharacterized protein family UPF0031) with a combined E-value of 1.3e-09.
    IPB000631B    374-385
    IPB000631C    439-449


 ProDom Summary:  Protein Domain Search
Residues 4-211 are 31% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD005835 which is seen in O67377_AQUAE.

Residues 240-453 are 35% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD005102 which is seen in YE33_SYNY3.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 21 to 193 (E-value = 4.4e-31) place PG0058 in the YjeF_N family which is described as YjeF-related protein N-terminus (PF03853)
Residues 252 to 497 (E-value = 8.5e-41) place PG0058 in the Carb_kinase family which is described as Carbohydrate kinase (PF01256)

 Structural Feature(s):
Feature Type  Start  Stop
non-globular  
229  
305
non-globular  
405  
504

Top PDB Hits:
-49% similar to PDB:2AX3 Crystal structure of hypothetical protein (tm0922) from THERMOTOGA MARITIMA at 2.27 A resolution (E_value = 3.7E_58);
-49% similar to PDB:1KYH Structural Genomics, Hypothetical protein in SIGY-CYDD intergenic region (E_value = 1.7E_26);

Gene Protein Sequence:
MIGIFTGARIKELDRYTIEHEPVSSIDLVERAAATWVYEFERLYTQQRRI
VVFAGPGNNGADALCAARILGENGYSVDAFLFNVSGSLSPECNECRVRLL
ETSGIRLTEVVDNFIPPELSSQTIVVDGLFGVGLNRPLQGGFAKVVEFLN
QSGAEIVSIDIPSGLFEEDNFGNNPNAIIRATHTLTFEYPKLSFLFSENA
DYVGKWKVLNIGLSVEGKQTIKTEYFLNTDFDISGIIRQRPRFAHKGTFG
HALLIAGSRGKMGAACLAAKACLRSGIGLLTTHIPACGEAVMQTAVPEAM
VHADEKTDIVCDYSSPLVFQAVGIGPGIGRAEGTVLLVEKILSTPNGPLV
LDADALNIIAENRSWLDRLPINSILTPHSRELERLTTHCNTDYERLRQAR
FLACHHHVYVVLKGAFSATCMPGGMVVFNNTGNPGMATGGSGDVLMGIIT
GLLGSGYLPASACVLGNYIHGLAGDIYAGRYSQESLIASDIIDNLGTAFR
QVRD

Gene Nucleotide Sequence:  Sequence Viewer
ATGATCGGGATATTCACTGGAGCACGCATCAAGGAGCTTGACCGCTACAC
GATAGAGCACGAGCCTGTCTCTTCGATCGATTTAGTCGAACGAGCAGCCG
CCACATGGGTGTATGAATTCGAACGTCTCTACACCCAGCAGCGCCGGATC
GTAGTCTTCGCCGGCCCTGGCAATAATGGAGCGGATGCCCTGTGTGCAGC
CCGTATTCTGGGCGAAAACGGCTATTCGGTGGATGCCTTTCTCTTCAATG
TCAGCGGATCGCTCAGCCCCGAATGCAACGAATGCAGGGTACGCCTGTTG
GAGACTTCGGGGATCAGGCTGACCGAGGTGGTGGACAACTTCATTCCGCC
GGAACTTTCCAGCCAGACCATAGTGGTGGACGGTCTTTTCGGCGTGGGAC
TGAATCGTCCTCTACAGGGCGGATTTGCCAAGGTCGTGGAGTTCCTCAAC
CAATCCGGAGCAGAGATCGTATCAATAGACATCCCTTCGGGGCTGTTCGA
AGAGGATAACTTCGGCAATAATCCGAATGCCATCATCAGAGCCACACACA
CCCTTACGTTCGAATATCCCAAACTATCCTTCCTCTTCTCCGAAAACGCC
GACTATGTAGGCAAGTGGAAAGTCCTGAATATCGGTCTGAGCGTCGAAGG
AAAGCAAACGATCAAGACAGAGTATTTCCTCAATACCGATTTCGATATAT
CCGGCATCATCCGGCAACGCCCTCGTTTTGCGCACAAAGGAACGTTCGGC
CATGCTCTGCTCATAGCGGGAAGTCGGGGCAAGATGGGAGCGGCTTGTCT
GGCTGCAAAGGCTTGTCTCCGAAGCGGTATCGGTCTATTAACTACCCATA
TACCCGCCTGTGGCGAGGCTGTCATGCAGACCGCCGTGCCGGAGGCCATG
GTACATGCCGATGAAAAGACGGATATAGTCTGCGACTATTCCTCTCCGCT
GGTTTTTCAGGCTGTAGGTATCGGCCCCGGCATAGGACGGGCAGAAGGCA
CAGTCCTTTTGGTCGAAAAGATACTTTCCACTCCTAACGGCCCCTTGGTG
CTTGATGCCGATGCCTTGAACATCATTGCAGAAAACCGCAGTTGGCTCGA
TCGTCTGCCTATCAACAGCATCCTCACACCTCACTCGCGAGAACTGGAAC
GGCTGACCACCCATTGCAATACGGACTATGAACGGCTGCGCCAAGCCCGA
TTCCTCGCCTGTCATCATCATGTCTATGTAGTCCTGAAAGGAGCATTCAG
TGCAACCTGTATGCCCGGCGGCATGGTCGTATTCAACAATACGGGCAACC
CCGGCATGGCGACAGGAGGAAGCGGCGATGTCCTCATGGGCATCATTACC
GGCCTATTGGGGTCAGGCTATCTTCCTGCTTCAGCCTGTGTCCTCGGCAA
TTATATCCACGGTTTGGCCGGAGACATCTATGCCGGACGCTATAGTCAGG
AGAGTCTGATAGCATCGGATATTATCGACAATCTGGGTACAGCGTTCAGA
CAAGTTCGCGAT

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