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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0057 IGR0061 IGR0058 IGR0060 IGR0056 IGR0059 PG0068 pyrF,ura3, - PG0062 prfA, - PG0063 PG0064 abiPg, - PG0067 fabZ, - PG0060 PG0069 PG0068 pyrF,ura3, - PG0062 prfA, - PG0063 PG0064 abiPg, - PG0067 fabZ, - PG0060 PG0069 PG0068 pyrF,ura3, - PG0062 prfA, - PG0063 PG0064 abiPg, - PG0067 fabZ, - PG0060 PG0066 PG0065 firA,lpxD, - PG0061 PG0066 PG0065 firA,lpxD, - PG0061 PG0069


LANL Gene ID: PG0064

GenBank Locus Tag: PG0075

DNA Molecule Name:
1  

GenBank ID:
34539946

Gene Name:


Definition:
phosphoribosyl-aminoimidazole synthetase (AIRS)

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
90528

Gene Stop:
89290

Gene Length:
1239

Molecular Weight*:
45467

pI*:
6.40

Net Charge*:
-3.14

EC:
6.3.3.1  

Functional Class:
Purines, pyrimidines, nucleosides and nucleotides; Purine ribonucleotide biosynthesis  

Gene Ontology:

Pathway: pathway table
Purine metabolism

Comment:
TIGR ID: PG0075

Proteomic Data: Proteomic Data Search
TIGR Annotationphosphoribosylformylglycinamidine cyclo-ligase, putative, GroupO (purines, pyrimidines, nucleosides and nucleotides)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00752.703.8e-092.194.6e-071.824e-092.194.6e-07
LANLPG00646.514.583.532.05
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Several hits in gapped BLAST to phosphoribosylaminoimidazole synthetase sequences, e.g. residues 72-397 are 44% similar to the enzyme from Methanococcus jannaschii (U67476).

This sequence is similar to BT4211.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539946|ref|NP_904425.1|  phosphoribosylformylglycinamid...   853   0.0  
 gi|53712204|ref|YP_098196.1|  putative phosphoribosylformylg...   658   0.0  
 gi|60680384|ref|YP_210528.1|  possible phosphoribosylformylg...   658   0.0  
 gi|29349619|ref|NP_813122.1|  putative phosphoribosylformylg...   657   0.0  
 gi|154490830|ref|ZP_02030771.1|  hypothetical protein PARMER...   655   0.0  
 gi|153807531|ref|ZP_01960199.1|  hypothetical protein BACCAC...   651   0.0  
 gi|150008711|ref|YP_001303454.1|  putative phosphoribosylfor...   651   0.0  
 gi|150002700|ref|YP_001297444.1|  putative phosphoribosylfor...   651   0.0  
 gi|156107455|gb|EDO09200.1|  hypothetical protein BACOVA_050...   649   0.0  
 gi|156859246|gb|EDO52677.1|  hypothetical protein BACUNI_034...   636   0.0


InterPro Summary:  InterProScan

InterPro
IPR010918
Domain
AIR synthase related protein, C-terminal
PF02769 [256-405]T 0.450000003859273 PF02769 AIRS_C AIRS_C
noIPR
unintegrated
unintegrated
G3DSA:3.90.650.10 [199-406]T 4.00000300869916E-29 G3DSA:3.90.650.10 G3DSA:3.90.650.10 G3DSA:3.90.650.10
PTHR10520 [30-245]T 0.0 PTHR10520 PTHR10520[271-405]T 0.0 PTHR10520 PTHR10520 PTHR10520
PTHR10520:SF4 [30-245]T 0.0 PTHR10520:SF4 PTHR10520:SF4[271-405]T 0.0 PTHR10520:SF4 PTHR10520:SF4 PTHR10520:SF4
SSF55326 [29-198]T 1.0E-5 SSF55326 SSF55326 SSF55326
SSF56042 [199-406]T 1.1999999999999999E-32 SSF56042 SSF56042 SSF56042


COGS Summary:  COGS Search
BeTs to 11 clades of COG0150
COG name: Phosphoribosylaminoimidazol (AIR) synthetase PurM
Functional Class: F
The phylogenetic pattern of COG0150 is amtkyqvcebrh---------
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 277-397 are 31% similar to a (LIGASE SYNTHETASE PURINE PROTEIN) protein domain (PD002449 which is seen in PUR5_METJA.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
transmembrane  
117  
133

Top PDB Hits:
-44% similar to PDB:2BTU CRYSTAL STRUCTURE OF PHOSPHORIBOSYLFORMYLGLYCINAMIDINE CYCLO-LIGASE FROM BACILLUS ANTHRACIS AT 2.3A RESOLUTION. (E_value = 1.2E_14);

Gene Protein Sequence:
MANIYPKRAIYCACAKTRKQRRSSYMSNERYNLRGVSASKEDVHAAIKNV
DKGIFPQAFCKIIPDILGGDPDYCNIMHADGAGTKSSLAYVYWRETGDLS
VWKGIAQDALIMNIDDLLCVGAVDNILVSSTIGRNKRLIPGEVVSAIING
TEELLADLRRMGVNAYATGGETADVGDLVRTIIVDSTVTCRMKRSDVIDN
ARIKAGDVIVGLASFGQASYEEQYNGGMGSNGLTSARHDVFAHYLAEKYP
ESFDPSVPDDLVYSGSMKLTDAIAGLGLDAGKLVLSPTRTYAPVVKAILD
EMSRRIHGMVHCSGGAQTKVMHFVKNKRVVKDNFFPTPPLFELIQRESLT
EWSEMYKVFNMGHRLEVYLSEENASHVIEISESFGIPARIVGRVEEAPTN
ELILQTPYGEIRY

Gene Nucleotide Sequence:  Sequence Viewer
ATGGCGAATATATACCCCAAGAGGGCGATATACTGCGCTTGCGCTAAAAC
AAGAAAACAAAGACGAAGCAGCTATATGTCTAACGAACGCTATAACCTGC
GCGGAGTGTCGGCCTCGAAAGAGGATGTGCATGCCGCCATCAAGAATGTG
GACAAGGGTATTTTCCCTCAGGCATTCTGCAAGATTATTCCGGATATTCT
CGGGGGCGATCCTGACTATTGCAATATCATGCATGCCGACGGGGCCGGCA
CCAAAAGCTCGCTTGCATACGTTTACTGGCGCGAGACGGGAGACCTCTCC
GTATGGAAAGGAATTGCACAGGATGCGCTGATCATGAATATAGACGATCT
GCTGTGCGTCGGTGCCGTGGATAATATACTTGTGTCCTCGACCATCGGCC
GGAACAAACGGCTGATACCGGGCGAAGTGGTATCGGCTATTATCAACGGC
ACGGAAGAACTCCTGGCCGATCTGCGTCGCATGGGTGTGAATGCCTATGC
CACGGGGGGTGAAACGGCTGATGTGGGCGATCTCGTCAGGACTATCATCG
TGGACAGTACGGTGACTTGCCGGATGAAGCGATCGGATGTGATAGACAAT
GCCCGTATCAAGGCCGGCGACGTTATCGTCGGGTTAGCCTCATTCGGACA
AGCTTCCTACGAGGAACAGTACAACGGCGGTATGGGGAGCAACGGACTGA
CCTCTGCTCGCCACGACGTTTTTGCCCACTATCTGGCAGAGAAGTATCCG
GAGAGTTTCGATCCCTCGGTGCCGGACGATTTGGTCTATAGCGGCAGCAT
GAAGCTGACCGATGCCATAGCCGGATTGGGGCTGGACGCAGGCAAGCTCG
TGCTCTCGCCCACACGTACCTACGCCCCTGTGGTCAAGGCCATACTGGAC
GAAATGAGTCGTCGCATTCATGGCATGGTACACTGCTCCGGCGGTGCGCA
GACCAAGGTGATGCACTTCGTCAAGAATAAGCGCGTGGTCAAGGACAACT
TCTTCCCGACACCTCCTCTCTTTGAGCTGATACAGCGCGAAAGCCTAACT
GAGTGGTCGGAGATGTACAAGGTCTTCAACATGGGACATCGTCTCGAAGT
GTATCTGTCCGAAGAGAATGCCTCGCACGTGATCGAAATATCCGAGAGCT
TCGGTATTCCGGCGCGCATCGTCGGTCGTGTGGAAGAAGCTCCGACCAAC
GAATTGATCCTCCAAACGCCCTATGGCGAGATCCGATAC

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