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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0057 IGR0061 IGR0058 IGR0060 IGR0056 IGR0059 PG0068 pyrF,ura3, - PG0062 prfA, - PG0063 PG0064 abiPg, - PG0067 fabZ, - PG0060 PG0069 PG0068 pyrF,ura3, - PG0062 prfA, - PG0063 PG0064 abiPg, - PG0067 fabZ, - PG0060 PG0069 PG0068 pyrF,ura3, - PG0062 prfA, - PG0063 PG0064 abiPg, - PG0067 PG0066 PG0065 firA,lpxD, - PG0061 PG0066 PG0065 firA,lpxD, - PG0061 fabZ, - PG0060 PG0069


LANL Gene ID: PG0065

GenBank Locus Tag: PG0076

DNA Molecule Name:
1  

GenBank ID:
34539947

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Periplasm, Outer membrane, Extracellular [Evidence]

Gene Start:
91423

Gene Stop:
90485

Gene Length:
939

Molecular Weight*:
36201

pI*:
10.10

Net Charge*:
14.46

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:
Biological process
  GO:0009253    peptidoglycan catabolic process
  GO:0016998    cell wall catabolic process

Molecular function
  GO:0004040    amidase activity


Pathway: pathway table

Comment:
TIGR ID: PG0076

Proteomic Data: Proteomic Data Search
TIGR AnnotationN-acetylmuramoyl-L-alanine amidase, family 4, GroupC (cell envelope)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00760.450.130.590.0360.620.0920.590.036
LANLPG00651.371.511.542.48
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
One strong hit in gapped BLAST to hemagglutinin and some weak hits to conserved hypothetical proteins and possible flagellar proteins. Residues 8-298 are 44% similar to a hemagglutinin from Prevotella intermedia (AF017417). Residues 32-171 are 32% similar to the N-acetylmuramoyl-L-alanine amidase homolog yubE from Bacillus subtilis (Z99119). Residues 35-166 are 34% similar to the polar FlgJ flagellar homolog from Vibrio parahaemolyticus (U12817).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539947|ref|NP_904426.1|  N-acetylmuramoyl-L-alanine ami...   623   e-177
 gi|150008710|ref|YP_001303453.1|  glycoside hydrolase family...   282   2e-74
 gi|154490831|ref|ZP_02030772.1|  hypothetical protein PARMER...   281   4e-74
 gi|53712788|ref|YP_098780.1|  hemagglutinin [Bacteroides fra...   280   7e-74
 gi|156108154|gb|EDO09899.1|  hypothetical protein BACOVA_042...   279   2e-73
 gi|29346948|ref|NP_810451.1|  hemagglutinin [Bacteroides the...   278   4e-73
 gi|156858282|gb|EDO51713.1|  hypothetical protein BACUNI_042...   278   5e-73
 gi|150004879|ref|YP_001299623.1|  glycoside hydrolase family...   276   1e-72
 gi|153808631|ref|ZP_01961299.1|  hypothetical protein BACCAC...   275   3e-72
 gi|2394284|gb|AAB70257.1|  hemagglutinin [Prevotella interme...   224   5e-57


InterPro Summary:  InterProScan

InterPro
IPR002482
Domain
Peptidoglycan-binding LysM
PF01476 [214-257]T 0.780000003557047 PF01476 LysM[270-313]T 4.00000081278156E-4 PF01476 LysM LysM
SM00257 [213-257]T 0.689999999999999 SM00257 LysM[269-313]T 0.00250000000000001 SM00257 LysM LysM
InterPro
IPR002901
Domain
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
PF01832 [38-167]T 1.0E-34 PF01832 Glucosaminidase Glucosaminidase
noIPR
unintegrated
unintegrated
SSF54106 [210-259]T 1.2E-4 SSF54106 SSF54106[266-312]T 3.7E-6 SSF54106 SSF54106 SSF54106


COGS Summary:  COGS Search
BeTs to 3 clades of COG1705
COG name: Flagellar biosynthesis protein FlgJ, probable N-acetylmuramidase
Functional Class: N
The phylogenetic pattern of COG1705 is ------v-eb-----------
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 213-298 are 42% similar to a (HEMAGGLUTININ) protein domain (PD113116 which is seen in O30793_PREIN.

Residues 48-171 are 60% similar to a (PROTEIN PRECURSOR FLAGELLAR FLAGELLA) protein domain (PD007611 which is seen in O30793_PREIN.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 38 to 167 (E-value = 7.2e-37) place PG0065 in the Amidase_4 family which is described as Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (PF01832)
Residues 270 to 313 (E-value = 5.1e-07) place PG0065 in the LysM family which is described as LysM domain (PF01476)

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
26
gram negative signal  
1  
24

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MRANIWQILSVSVLFFFGTAIGQAQSRNRTYEAYVKQYADEAIRQMSRYN
IPASITIAQALVETGAGASTLASVHNNHFGIKCHKSWTGKRTYRTDDAPN
ECFRSYSAARESYEDHSRFLLQPRYRPLFKLDREDYRGWATGLQRCGYAT
NRGYANLLIKMVELYELYALDREKYPSWFHKSYPGSNKKSHQTTKQKQSG
LKHEAYFSYGLLYIIAKQGDTFDSLAEEFDMRASKLAKYNDAPVDFPIEK
GDVIYLEKKHACSISKHTQHVVRVGDSMHSISQRYGIRMKNLYKLNDKDG
EYIPQEGDILRLR

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGAGCAAACATTTGGCAGATACTTTCCGTTTCGGTTCTCTTTTTCTT
CGGGACAGCGATCGGACAGGCTCAGAGTCGAAACCGTACATACGAGGCTT
ATGTGAAACAGTACGCCGACGAAGCTATCCGACAGATGAGCCGCTACAAT
ATACCGGCAAGCATCACCATAGCACAGGCTTTGGTGGAGACAGGAGCCGG
AGCCAGTACACTGGCCAGCGTACACAACAATCACTTCGGGATCAAATGCC
ACAAATCGTGGACGGGCAAGCGCACCTATCGTACCGACGATGCGCCGAAC
GAATGCTTCCGCAGCTATTCGGCCGCTCGCGAATCGTATGAAGATCATTC
CCGATTTCTGCTCCAACCACGCTATCGTCCCCTGTTCAAACTCGACAGAG
AAGACTATCGGGGCTGGGCTACGGGGTTGCAACGCTGTGGCTATGCCACC
AATCGGGGCTATGCCAATCTGCTGATCAAGATGGTGGAGCTGTATGAGCT
ATATGCTTTGGATCGCGAGAAGTACCCCTCATGGTTCCACAAGTCTTACC
CCGGGTCCAACAAAAAATCCCATCAAACGACCAAGCAGAAGCAGAGCGGA
CTCAAGCACGAAGCTTACTTCAGCTACGGACTGCTCTACATCATAGCCAA
GCAAGGCGATACCTTCGATTCTTTGGCCGAAGAGTTCGACATGAGAGCCT
CCAAACTGGCCAAATACAACGATGCTCCCGTGGATTTCCCGATCGAAAAG
GGCGATGTGATCTATCTGGAGAAAAAGCACGCATGCTCCATCTCCAAACA
CACACAGCACGTAGTGCGTGTGGGCGATTCGATGCACAGTATCTCCCAAC
GCTATGGCATCCGGATGAAGAACCTCTACAAGCTCAACGACAAGGATGGC
GAATATATACCCCAAGAGGGCGATATACTGCGCTTGCGC

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