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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0057 IGR0061 IGR0058 IGR0060 IGR0062 IGR0056 IGR0059 PG0068 pyrF,ura3, - PG0062 firA,lpxD, - PG0061 prfA, - PG0063 PG0064 abiPg, - PG0067 PG0070 PG0069 PG0068 pyrF,ura3, - PG0062 firA,lpxD, - PG0061 prfA, - PG0063 PG0064 abiPg, - PG0067 PG0070 PG0069 PG0068 pyrF,ura3, - PG0062 firA,lpxD, - PG0061 prfA, - PG0063 PG0064 abiPg, - PG0067 PG0066 PG0065 PG0066 PG0065 PG0070 PG0069


LANL Gene ID: PG0066

GenBank Locus Tag: PG0078

DNA Molecule Name:
1  

GenBank ID:
34539948

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
92354

Gene Stop:
91659

Gene Length:
696

Molecular Weight*:
27462

pI*:
8.10

Net Charge*:
2.99

EC:
 

Functional Class:
Unknown  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0078

Proteomic Data: Proteomic Data Search
TIGR Annotationhypothetical protein, GroupK (hypothetical proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0078-1.250.11-4.590.0027-2.140.0084-4.590.0027
LANLPG00660.420.040.230.03
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Its nearest neighbor in the NR database is 34762670 from Fusobacterium nucleatum subsp. vincentii ATCC 49256.


 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539948|ref|NP_904427.1|  hypothetical protein PG0078 [P...   424   e-117
 gi|150006157|ref|YP_001300901.1|  hypothetical protein BVU_3...   128   3e-28
 gi|149199122|ref|ZP_01876161.1|  hypothetical protein LNTAR_...   113   1e-23
 gi|119509309|ref|ZP_01628459.1|  hypothetical protein N9414_...   111   3e-23
 gi|119492205|ref|ZP_01623615.1|  hypothetical protein L8106_...   111   3e-23
 gi|153870849|ref|ZP_02000161.1|  abortive phage resistance p...    91   4e-17
 gi|154503983|ref|ZP_02041043.1|  hypothetical protein RUMGNA...    83   1e-14
 gi|91787448|ref|YP_548400.1|  hypothetical protein Bpro_1558...    75   2e-12
 gi|119357989|ref|YP_912633.1|  hypothetical protein Cpha266_...    75   3e-12
 gi|67920893|ref|ZP_00514412.1|  conserved hypothetical prote...    74   5e-12


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
1  
32
coil-coil  
54  
97

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MGQPPKREIERLKREKREAKAARKRKENTRDIIVRFLIVCEGQKTEPNYF
KALIDNHYSEVREAEIRGQGCSTCALVERAKEIRDNLEKERELGFDRIWV
VFDKDDFDDFNQAIDLAKSYGFGCAWTNEAFELWFLLHFQYLDVPISRDA
YISKLENLIQKRLNDNSFRYNKNDPSFYNILKDHGDGILAKRYAEKLRLK
HKDKDYANHNPCTRVDLLVEELENPLSVLKNK

Gene Nucleotide Sequence:  Sequence Viewer
ATGGGACAACCACCAAAAAGAGAAATAGAACGACTAAAACGTGAAAAGCG
AGAAGCAAAAGCCGCAAGAAAACGCAAAGAGAATACCCGGGACATAATAG
TTCGATTCCTGATCGTTTGTGAAGGACAAAAGACGGAACCCAACTATTTT
AAGGCTTTGATTGACAACCACTACTCGGAAGTTCGTGAGGCAGAGATTAG
GGGACAAGGTTGTTCTACTTGTGCATTAGTCGAACGAGCCAAAGAGATTC
GGGATAATCTCGAAAAAGAGCGTGAATTAGGCTTTGATCGGATTTGGGTT
GTCTTTGATAAAGACGATTTTGATGATTTTAATCAAGCTATCGACCTTGC
AAAGAGCTATGGTTTCGGATGCGCTTGGACAAACGAAGCTTTTGAATTGT
GGTTCCTTCTCCATTTCCAATATCTGGATGTACCTATCAGCCGTGATGCT
TACATTTCCAAACTTGAAAACTTGATACAAAAGCGACTTAATGATAATTC
TTTCCGATACAATAAGAATGATCCCTCCTTTTACAACATATTGAAAGACC
ATGGAGATGGAATTTTAGCAAAGCGATATGCCGAAAAACTTCGCTTGAAA
CACAAGGATAAAGATTATGCTAATCACAACCCCTGTACAAGGGTCGATCT
ATTGGTTGAGGAATTGGAAAATCCCCTGTCCGTATTAAAGAACAAA

Los Alamos National Laboratory • Est 1943

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