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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0063 IGR0057 IGR0061 IGR0058 IGR0060 IGR0062 IGR0064 IGR0059 PG0068 pyrF,ura3, - PG0062 prfA, - PG0063 PG0064 abiPg, - PG0067 PG0071 PG0070 sda,sdh, - PG0072 PG0069 PG0068 pyrF,ura3, - PG0062 prfA, - PG0063 PG0064 abiPg, - PG0067 PG0071 PG0070 sda,sdh, - PG0072 PG0069 PG0068 pyrF,ura3, - PG0062 prfA, - PG0063 PG0064 abiPg, - PG0067 PG0066 PG0065 PG0066 PG0065 PG0070 sda,sdh, - PG0072 PG0069 PG0071


LANL Gene ID: PG0067

GenBank Locus Tag: PG0079

DNA Molecule Name:
1  

GenBank ID:
34539949

Gene Name:
abiPg  

Definition:
possible abortive phage resistance protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
93628

Gene Stop:
92330

Gene Length:
1299

Molecular Weight*:
50017

pI*:
5.90

Net Charge*:
-3.88

EC:
 

Functional Class:
Uncategorized  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0079

Proteomic Data: Proteomic Data Search
TIGR Annotationabortive infection protein, putative, GroupD (cellular processes)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00790.290.151.860.000381.360.000481.860.00038
LANLPG00671.223.622.572.26
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
A single hit in gapped BLAST to an abortive phage resistance protein from Lactococcus lactis (U94520): residues 1-417 are 45% similar to this protein.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539949|ref|NP_904428.1|  abortive infection protein, pu...   832   0.0  
 gi|150006158|ref|YP_001300902.1|  putative ATPase involved i...   337   6e-91
 gi|67919993|ref|ZP_00513513.1|  abortive infection protein, ...   301   8e-80
 gi|149199123|ref|ZP_01876162.1|  abortive infection protein,...   286   3e-75
 gi|119509308|ref|ZP_01628458.1|  abortive infection protein,...   280   2e-73
 gi|83857450|ref|ZP_00950978.1|  abortive infection protein, ...   270   2e-70
 gi|153870850|ref|ZP_02000162.1|  RloA [Beggiatoa sp. PS] >gi...   258   4e-67
 gi|153870255|ref|ZP_01999693.1|  conserved hypothetical prot...   256   2e-66
 gi|91787447|ref|YP_548399.1|  hypothetical protein Bpro_1557...   238   4e-61
 gi|119357988|ref|YP_912632.1|  hypothetical protein Cpha266_...   236   2e-60


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
SSF52540 [2-362]T 8.1E-6 SSF52540 SSF52540 SSF52540


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 1-417 are 28% similar to a (ABORTIVE PHAGE RESISTANCE PROTEIN) protein domain (PD141879 which is seen in O06042_BBBBB.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
non-globular  
1  
77

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MLVNFTFKNFRSFRDEKTLSMEASAIKELSKSVIRKGAYKLLPAAVLYGA
NSSGKSNALFALAKMRSIVLDSVKLNPQDTLRFDPFMLDRESAQKPTSFE
IQFLKDGVKYRYGFEYDKTRIISEWLYEKQEKEREFNLFLRAGSEFEISK
KRFPEGDSKADATPGNRLFVSLCAQLNGKKSSSILDWFQHCNLISVVEKQ
GYEGFTLKMLKENPEGCNEAKDFFRRTQLGFKDLIVTEQPLSNDVLKEVP
DELKEFILKEFDGRSVLEIKTSHWVYDQDGNQVEEKIFAKDEMESEGTKK
VIELSGPLFDTLKEGSVLLIDELDAKLHPLLTRSILKLFMSPETNPNGAQ
LIFNTHDTNLLKGDYLRRDQIWFTEKDRTESSDLYSLIEFRDAEGVKVRK
DRSFQNDYINGRYGAIPFIFSSVEPWDNHQKEK

Gene Nucleotide Sequence:  Sequence Viewer
ATGTTGGTCAACTTCACTTTTAAGAATTTCCGCTCATTCAGAGATGAAAA
AACTTTGAGCATGGAAGCTTCTGCCATCAAAGAACTTTCCAAATCTGTCA
TTAGGAAAGGAGCTTACAAACTCCTTCCGGCAGCCGTTTTATACGGAGCC
AATTCAAGTGGAAAAAGCAATGCTCTTTTTGCTTTGGCCAAAATGCGTAG
CATCGTATTGGATTCGGTAAAATTGAACCCTCAGGATACTCTTCGTTTCG
ACCCGTTTATGTTGGATCGGGAATCTGCCCAAAAACCAACTTCTTTTGAA
ATACAATTTTTGAAAGACGGTGTAAAATACAGATATGGTTTCGAGTATGA
TAAAACCCGTATCATTAGTGAGTGGCTATATGAAAAGCAAGAAAAGGAGA
GGGAGTTCAATTTGTTTCTTCGTGCCGGAAGCGAGTTCGAAATATCCAAG
AAGCGATTTCCGGAAGGTGATAGCAAAGCAGATGCTACGCCCGGGAATAG
ACTTTTTGTGTCCTTGTGTGCGCAGCTAAATGGAAAGAAATCATCTTCTA
TTTTGGACTGGTTTCAGCACTGCAATCTTATTTCGGTTGTAGAAAAACAG
GGTTATGAAGGCTTTACCCTGAAAATGCTCAAAGAAAATCCGGAAGGATG
TAATGAAGCCAAAGACTTCTTCCGTCGCACGCAGTTAGGATTCAAAGACT
TGATCGTCACAGAGCAACCTCTTTCGAACGATGTACTCAAGGAAGTACCG
GATGAATTGAAAGAATTCATATTGAAAGAATTCGATGGCCGAAGCGTATT
AGAAATCAAAACTTCTCATTGGGTATATGACCAAGACGGTAATCAGGTCG
AGGAAAAAATTTTCGCCAAGGATGAAATGGAATCGGAAGGAACCAAGAAA
GTCATAGAGCTTTCAGGCCCTTTATTCGACACATTGAAAGAAGGTTCTGT
TTTGCTGATAGACGAATTAGATGCCAAACTCCACCCCCTTTTGACCAGAA
GTATTCTGAAGTTGTTTATGTCTCCGGAGACAAATCCCAATGGAGCACAG
TTGATCTTTAATACTCACGACACAAATCTGCTGAAGGGCGATTATTTACG
CCGTGATCAAATCTGGTTCACGGAAAAAGACAGGACAGAATCCTCCGATC
TTTATTCATTGATAGAGTTTCGAGATGCAGAAGGAGTAAAAGTTCGTAAA
GATCGGAGTTTTCAAAACGACTATATTAACGGACGTTATGGAGCTATCCC
GTTCATTTTTTCAAGTGTAGAGCCATGGGACAACCACCAAAAAGAGAAA

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