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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0063 IGR0061 IGR0060 IGR0062 IGR0064 IGR0065 IGR0059 PG0068 PG0064 abiPg, - PG0067 PG0071 PG0070 sda,sdh, - PG0072 melA, - PG0073 PG0069 PG0068 PG0064 abiPg, - PG0067 PG0071 PG0070 sda,sdh, - PG0072 melA, - PG0073 PG0069 PG0068 abiPg, - PG0067 PG0066 PG0065 PG0066 PG0065 PG0064 PG0071 PG0070 sda,sdh, - PG0072 melA, - PG0073 PG0069


LANL Gene ID: PG0069

GenBank Locus Tag: PG0081

DNA Molecule Name:
1  

GenBank ID:
34539951

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Outer membrane, Periplasm [Evidence]

Gene Start:
93945

Gene Stop:
96119

Gene Length:
2175

Molecular Weight*:
81642

pI*:
9.40

Net Charge*:
8.56

EC:
 

Functional Class:
Unknown  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293

Comment:
TIGR ID: PG0081

Proteomic Data: Proteomic Data Search
TIGR Annotationhypothetical protein, GroupK (hypothetical proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0081-2.060.029-5.560.028-0.870.19-5.560.028
LANLPG00690.240.020.550.08
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Matches in gapped BLAST to 29348750 from Bacteroides thetaiotaomicron VPI-5482.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539951|ref|NP_904430.1|  hypothetical protein PG0081 [P...  1412   0.0  
 gi|154489932|ref|ZP_02030193.1|  hypothetical protein PARMER...   449   e-124
 gi|150009432|ref|YP_001304175.1|  hypothetical protein BDI_2...   440   e-121
 gi|53711484|ref|YP_097476.1|  hypothetical protein BF0193 [B...   387   e-105
 gi|156861905|gb|EDO55336.1|  hypothetical protein BACUNI_010...   363   2e-98
 gi|156110737|gb|EDO12482.1|  hypothetical protein BACOVA_019...   355   9e-96
 gi|153807255|ref|ZP_01959923.1|  hypothetical protein BACCAC...   353   2e-95
 gi|29348750|ref|NP_812253.1|  hypothetical protein BT_3341 [...   353   3e-95
 gi|150003609|ref|YP_001298353.1|  hypothetical protein BVU_1...   347   2e-93
 gi|88804762|ref|ZP_01120282.1|  hypothetical protein RB2501_...   197   2e-48


InterPro Summary:  InterProScan

InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464 [210-271]T 3.2000000000000003E-6 SSF49464 CarboxypepD_reg CarboxypepD_reg


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
75  
91
transmembrane  
215  
231
non-globular  
297  
345
non-globular  
441  
652

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MQSEERWLQCFCIVRQGVKPRKRFCSFFLWRVGAEETARGLLAEGEVSVE
NSIFVAKAPIFLRVMRKNRFGRLQLAVVAAVIIGLWMLSACANMGTPEGG
PYDVTPPRLLKATPAMGSTKQTGNKISLLFDEAIQILKQNETVIVSPPQI
KQPKISVYGRMLTIELRDNLRDSTTYTIDFTNGLADNNEGNILENFCYAF
STGDVLDSMQIGGRVIDALTLEPVAGVLVGIHDSEADTAFTKTPFLRTTL
TGEDGSFTLKNLHDGRYKVFALQDADRDYAYSQLSEGVAFSPDWYRTEVA
DDALPSDTLLANADTLMPVDSAMAEKGKTSTLQETPAESAAANTSLRQQP
VRYRPDNVLLRFYTSDFRREYLSKKSRPDSVQVSLLFNTRPDTIPALHLL
GEQKGKNWYSAIRKGEKEIVYWLTDKEIYSRDTLAFSVTYPKSDSLNIPR
PQTDTLRMAKPKVSVQRRPKGEAAASAPLMNISIKNSSSIASGTPGDTIS
IIASQPLALVDTAGVSVARQADSLWRDVPFKLRPDSLNPLKFFVDAGWQM
GQSYRVRIDSAVWRSVYDRWNAPVEQVFSFLPEEDLSSLLLKLSGEADST
AVVELLNKGGEPVATKKAERGEVLFPYLKPDVYYARLFLDENGNGRWDAG
NYPTKQPEWVFYYRQSFTLRKNWQQAEDWVVTREQYADQKPEAIRKVKPA
EKQKRDLNREYEERMARRSKKKSKK

Gene Nucleotide Sequence:  Sequence Viewer
ATGCAGAGCGAGGAGAGATGGCTGCAATGCTTTTGTATTGTTCGTCAAGG
AGTAAAACCGCGCAAGAGGTTTTGTTCCTTCTTCCTGTGGCGCGTCGGAG
CGGAGGAGACCGCGAGGGGGCTTTTGGCAGAGGGAGAAGTATCGGTCGAA
AACAGTATTTTTGTGGCCAAAGCACCTATATTTCTTAGGGTTATGAGAAA
GAACCGTTTCGGCCGATTGCAGCTTGCCGTCGTGGCAGCTGTCATTATAG
GCTTGTGGATGCTCTCGGCATGTGCCAATATGGGTACGCCGGAGGGGGGG
CCTTATGATGTGACGCCCCCGCGTTTGCTCAAGGCTACGCCGGCAATGGG
TAGCACGAAGCAAACAGGCAATAAGATCTCCCTCCTATTCGATGAAGCTA
TCCAGATATTGAAACAAAACGAGACGGTGATCGTCTCGCCACCACAGATC
AAACAGCCGAAAATATCCGTCTATGGCCGCATGCTGACCATCGAGCTGCG
CGACAATCTTCGCGACAGTACCACCTATACGATCGACTTTACCAACGGTT
TGGCCGACAACAACGAAGGGAATATCCTGGAAAACTTCTGCTATGCTTTT
TCCACCGGCGATGTACTTGATTCGATGCAGATCGGCGGCCGGGTGATCGA
TGCCCTGACGTTGGAGCCGGTGGCAGGTGTCTTGGTCGGCATTCACGATT
CGGAAGCGGATACGGCTTTCACGAAGACTCCTTTCCTGCGTACTACACTG
ACGGGAGAGGACGGCTCCTTCACGTTGAAAAATCTCCACGACGGCCGCTA
CAAAGTCTTTGCCCTTCAGGACGCCGATCGCGACTACGCCTATAGCCAGT
TGTCCGAAGGCGTTGCTTTTTCTCCGGATTGGTACCGTACCGAGGTGGCA
GATGATGCCTTGCCTTCGGATACACTCTTGGCCAATGCCGATACCCTTAT
GCCGGTGGATTCGGCAATGGCGGAAAAAGGGAAAACATCCACTCTCCAGG
AAACACCGGCCGAATCGGCGGCAGCGAATACATCGCTTCGGCAACAGCCT
GTCCGGTATCGCCCCGACAACGTTCTGCTCCGATTCTACACCTCCGACTT
CCGGCGGGAATATCTATCCAAGAAAAGTCGTCCCGATTCCGTACAAGTGT
CTCTACTATTCAACACAAGACCTGATACCATTCCGGCACTGCACCTGCTG
GGAGAGCAAAAGGGAAAAAACTGGTATTCGGCTATCAGAAAAGGTGAGAA
AGAGATCGTCTACTGGCTGACGGATAAAGAGATCTATAGCCGAGACACTT
TGGCCTTTTCGGTCACTTACCCCAAAAGCGACTCGCTCAACATTCCACGG
CCACAGACGGACACCTTGCGGATGGCCAAGCCGAAAGTATCCGTACAGCG
CCGTCCGAAAGGCGAAGCAGCAGCCTCTGCTCCTCTTATGAATATATCCA
TCAAGAATAGTAGCAGCATAGCATCGGGTACTCCGGGCGATACCATCAGT
ATCATAGCATCCCAACCGTTGGCTCTCGTGGATACGGCAGGCGTTTCCGT
AGCACGGCAAGCGGATAGCTTGTGGCGCGATGTCCCGTTCAAGCTCCGTC
CCGATTCGCTCAATCCGCTGAAGTTCTTCGTCGATGCCGGCTGGCAGATG
GGGCAGAGCTACCGCGTACGGATCGACTCGGCCGTCTGGCGAAGCGTGTA
CGACCGGTGGAACGCCCCCGTGGAGCAGGTGTTTTCGTTCCTTCCGGAGG
AGGATCTCAGCAGCCTGTTACTGAAGTTGTCGGGAGAGGCTGACAGTACT
GCCGTAGTGGAACTGCTGAATAAGGGTGGAGAGCCCGTAGCGACAAAGAA
AGCAGAACGGGGAGAAGTCCTCTTCCCGTACCTCAAGCCCGATGTCTACT
ATGCACGCCTGTTTCTCGATGAGAATGGCAACGGTCGCTGGGATGCCGGC
AATTACCCAACAAAGCAGCCCGAATGGGTGTTCTACTACCGCCAATCGTT
TACCCTCAGGAAGAACTGGCAGCAGGCCGAAGACTGGGTAGTCACTCGTG
AGCAGTATGCCGATCAGAAACCGGAAGCTATCCGAAAGGTAAAACCCGCA
GAGAAGCAAAAGCGCGACCTCAACAGGGAATACGAGGAGCGAATGGCTCG
CAGATCGAAGAAAAAGAGTAAGAAG

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