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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0063 IGR0061 IGR0066 IGR0060 IGR0062 IGR0064 IGR0065 IGR0059 PG0068 abiPg, - PG0067 PG0074 PG0071 PG0070 sda,sdh, - PG0072 melA, - PG0073 PG0069 PG0068 abiPg, - PG0067 PG0074 PG0071 PG0070 sda,sdh, - PG0072 melA, - PG0073 PG0069 PG0068 abiPg, - PG0067 PG0074 PG0066 PG0066 PG0071 PG0070 sda,sdh, - PG0072 melA, - PG0073 PG0069


LANL Gene ID: PG0070

GenBank Locus Tag: PG0082

DNA Molecule Name:
1  

GenBank ID:
34539952

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Outer membrane, Periplasm [Evidence]

Gene Start:
96184

Gene Stop:
97083

Gene Length:
900

Molecular Weight*:
32843

pI*:
5.60

Net Charge*:
-1.89

EC:
 

Functional Class:
Unknown  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293

Comment:
TIGR ID: PG0082

Proteomic Data: Proteomic Data Search
TIGR Annotationhypothetical protein, GroupK (hypothetical proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0082-2.250.017-6.600.00082-2.550.0011-6.600.00082
LANLPG00700.210.010.170.01
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Its nearest neighbor in the NR database is 29347491 from
Bacteroides thetaiotaomicron VPI-5482.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539952|ref|NP_904431.1|  hypothetical protein PG0082 [P...   579   e-164
 gi|29347491|ref|NP_810994.1|  hypothetical protein BT_2081 [...   132   2e-29
 gi|153808846|ref|ZP_01961514.1|  hypothetical protein BACCAC...   125   3e-27
 gi|156109650|gb|EDO11395.1|  hypothetical protein BACOVA_032...   124   6e-27
 gi|150008659|ref|YP_001303402.1|  hypothetical protein BDI_2...   124   9e-27
 gi|53715058|ref|YP_101050.1|  hypothetical protein BF3774 [B...   122   3e-26
 gi|29349153|ref|NP_812656.1|  hypothetical protein BT_3745 [...   121   6e-26
 gi|156112444|gb|EDO14189.1|  hypothetical protein BACOVA_000...   120   1e-25
 gi|60683020|ref|YP_213164.1|  hypothetical protein BF3562 [B...   120   1e-25
 gi|154494152|ref|ZP_02033472.1|  hypothetical protein PARMER...   116   2e-24


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
PS51257 [1-23]T 0.0 PS51257 PROKAR_LIPOPROTEIN PROKAR_LIPOPROTEIN


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
may be a lipoprotein  
  
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MKQRFSTIGIPLIFVLGVLLSGCYGFDPIKDKQNKLKEELNNGGSETSPT
PPEGQSVFDVRFSFEKWSDTTPALPLGEGGFSSSFWASASNEGFKAMPNP
TLPYPVTLADEGYQGRCVRMLTRPGIKVYGMGSYLVAASLFSGKVDVSKL
ISAPLEATYFGHRVRQRPIRLRGYYRYKAGSKYIDGSIGPDAVLEGKDQC
TIAGVFYEVTEDTPYLNGKNLYTAPSIVSIAKVIANDTDGWQPFDLTFRS
VGNKVVDLANKQYRLALVFSSSSRGDEYIGSVDSELLVDEVTLTLTTLPE


Gene Nucleotide Sequence:  Sequence Viewer
ATGAAGCAAAGATTTTCGACTATCGGCATACCGCTCATATTCGTTTTGGG
AGTATTGCTGTCGGGTTGTTACGGATTCGATCCGATCAAGGATAAACAAA
ACAAGCTGAAGGAAGAACTCAATAACGGAGGCAGCGAGACTTCGCCGACT
CCTCCGGAGGGACAGTCGGTATTCGATGTCCGTTTTTCTTTCGAGAAGTG
GTCGGACACAACTCCTGCCCTGCCGTTGGGAGAGGGGGGATTTTCCTCCT
CTTTTTGGGCTTCTGCCAGCAATGAGGGATTTAAGGCTATGCCCAATCCC
ACACTGCCGTACCCGGTCACACTCGCTGACGAAGGTTATCAGGGTCGTTG
CGTGCGGATGCTTACCCGACCCGGGATCAAGGTATACGGCATGGGTAGTT
ATCTGGTGGCGGCATCGCTTTTTTCCGGTAAGGTCGATGTATCGAAACTG
ATCTCTGCCCCATTGGAAGCCACTTACTTCGGGCACAGAGTACGCCAGCG
TCCGATTCGGCTGCGAGGTTACTATCGATACAAGGCCGGAAGCAAATATA
TCGATGGCAGCATAGGGCCGGATGCCGTGCTGGAAGGCAAAGACCAATGC
ACGATCGCCGGCGTATTCTATGAAGTAACTGAAGATACGCCCTACTTGAA
TGGCAAGAACCTCTATACTGCACCGTCCATCGTATCTATTGCCAAAGTGA
TAGCAAATGATACGGATGGGTGGCAGCCGTTCGATCTCACGTTCCGATCC
GTTGGCAATAAAGTCGTGGACTTGGCCAACAAGCAGTACCGCTTGGCTCT
GGTCTTTTCGTCTTCATCGCGTGGAGACGAGTATATCGGCTCCGTGGATA
GCGAACTGCTTGTCGATGAAGTAACCCTTACGCTGACTACTTTACCCGAA

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