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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0063 IGR0061 IGR0066 IGR0060 IGR0062 IGR0064 IGR0065 IGR0067 PG0068 abiPg, - PG0067 PG0074 PG0071 PG0070 sda,sdh, - PG0072 melA, - PG0073 PG0069 PG0068 abiPg, - PG0067 PG0074 PG0071 PG0070 sda,sdh, - PG0072 melA, - PG0073 PG0069 PG0068 abiPg, - PG0067 PG0074 PG0071 PG0070 sda,sdh, - PG0072 melA, - PG0073 PG0069


LANL Gene ID: PG0071

GenBank Locus Tag: PG0083

DNA Molecule Name:
1  

GenBank ID:
34539953

Gene Name:


Definition:
hypothetical protein

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
97092

Gene Stop:
97874

Gene Length:
783

Molecular Weight*:
29320

pI*:
9.10

Net Charge*:
3.63

EC:
 

Functional Class:
Unknown; Hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0083

Proteomic Data: Proteomic Data Search
TIGR Annotationhypothetical protein, GroupK (hypothetical proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0083-2.400.011-6.781.8e-06-1.550.056-6.781.8e-06
LANLPG00710.190.010.340.01
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No signnificant hits in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539953|ref|NP_904432.1|  hypothetical protein PG0083 [P...   539   e-152
 gi|156861108|gb|EDO54539.1|  hypothetical protein BACUNI_020...   109   2e-22
 gi|53715059|ref|YP_101051.1|  hypothetical protein BF3775 [B...   102   3e-20
 gi|156112443|gb|EDO14188.1|  hypothetical protein BACOVA_000...   101   5e-20
 gi|60683021|ref|YP_213165.1|  hypothetical protein BF3563 [B...   100   1e-19
 gi|29349152|ref|NP_812655.1|  hypothetical protein BT_3744 [...   100   1e-19
 gi|150002848|ref|YP_001297592.1|  hypothetical protein BVU_0...    98   4e-19
 gi|150008658|ref|YP_001303401.1|  hypothetical protein BDI_2...    97   9e-19
 gi|156109649|gb|EDO11394.1|  hypothetical protein BACOVA_032...    95   5e-18
 gi|153809415|ref|ZP_01962083.1|  hypothetical protein BACCAC...    94   8e-18


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
signalp [1-26]? NA signalp signal-peptide signal-peptide
tmhmm [5-23]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
26
gram negative signal  
1  
21

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MNRRYFLLNACFWSLCFILSAQESNASVRPSLWEFSSRVGMHVGASTPVP
VPQAMEHVYAWYPRLNPMVQLSASRRLLAGSPWAVNVGIAVEKKGMEATT
RVKDMKVAIVSDSPYAGNPDEEYPGLFTGDNNTEIRLGYLTIPVQAEYNM
LKDRLKLRGGLYTSLLLESSFRVIIDGTMVYDDPKLGTAQMDLRELNFSD
KIKGADFGVIIGADYYFARQIGAFADVTFGLIPLTGTHFKAIPYRMYNVF
ARIGFSYRLNY

Gene Nucleotide Sequence:  Sequence Viewer
ATGAACCGGCGATATTTTCTTTTGAATGCTTGCTTTTGGAGCCTCTGCTT
CATCCTGTCGGCTCAGGAGTCGAACGCTTCTGTCCGGCCGTCGCTTTGGG
AGTTTTCCAGCAGAGTGGGTATGCATGTGGGAGCATCCACACCGGTACCC
GTACCCCAAGCCATGGAGCACGTCTACGCGTGGTATCCGCGACTGAATCC
GATGGTGCAACTGAGTGCTTCGCGTCGTTTGCTTGCCGGCAGTCCGTGGG
CTGTGAACGTGGGTATAGCCGTAGAGAAAAAAGGCATGGAAGCTACTACA
CGAGTGAAAGATATGAAAGTAGCTATCGTGTCGGACTCGCCTTATGCCGG
CAACCCTGATGAAGAATATCCGGGACTATTCACCGGCGACAACAATACGG
AGATACGCCTGGGCTACCTGACGATACCCGTACAGGCGGAATACAATATG
CTCAAGGACAGGCTGAAGCTGCGCGGAGGTCTCTATACGTCCCTGCTGCT
GGAGAGTTCCTTCCGCGTGATCATCGACGGTACGATGGTCTATGACGATC
CCAAGCTGGGAACAGCGCAGATGGATCTGCGCGAACTGAACTTCTCGGAC
AAGATAAAGGGAGCGGATTTCGGTGTCATAATAGGAGCCGACTATTATTT
CGCGCGACAGATAGGTGCGTTTGCCGATGTCACATTCGGCCTGATCCCTC
TGACGGGTACACACTTCAAGGCTATTCCTTACCGGATGTATAACGTCTTC
GCACGTATCGGATTTTCCTACAGACTCAATTAC

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