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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0073 IGR0074 IGR0072 IGR0071 IGR0067 IGR0069 IGR0068 IGR0070 IGR0075 PG0076 PG0082 PG0081 PG0080 PG0083 PG0074 PG0078 dps, - PG0079 PG0077 PG0076 PG0082 PG0081 PG0080 PG0083 PG0074 PG0078 dps, - PG0079 PG0077 Type: tandem, Name: tan33 - 241 Type: tandem, Name: tan34 - 242 Type: tandem, Name: tan84 - 292 PG0076 PG0082 PG0081 PG0080 PG0083 PG0074 PG0078 dps, - PG0079 PG0077


LANL Gene ID: PG0080

GenBank Locus Tag: PG0091

DNA Molecule Name:
1  

GenBank ID:
34539960

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
107490

Gene Stop:
106276

Gene Length:
1215

Molecular Weight*:
46199

pI*:
7.70

Net Charge*:
3.09

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0091

Proteomic Data: Proteomic Data Search
TIGR Annotationtransporter, putative, GroupS (transport and binding proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0091-1.250.11-4.393.4e-05-0.550.27-4.393.4e-05
LANLPG00800.420.050.680.04
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Several hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 41-383 are 28% similar to (AE004761) from P.aeruginosa, residues 5-370 are 26% similar to (AE004238) conserved hypothetical protein Vibrio cholerae.

This sequence is similar to BT3902.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539960|ref|NP_904439.1|  transporter, putative [Porphyr...   802   0.0  
 gi|153809118|ref|ZP_01961786.1|  hypothetical protein BACCAC...   507   e-142
 gi|29349310|ref|NP_812813.1|  hypothetical protein BT_3902 [...   507   e-142
 gi|156111381|gb|EDO13126.1|  hypothetical protein BACOVA_011...   506   e-141
 gi|53715271|ref|YP_101263.1|  hypothetical protein BF3987 [B...   506   e-141
 gi|60683207|ref|YP_213351.1|  putative transport-related mem...   505   e-141
 gi|156859681|gb|EDO53112.1|  hypothetical protein BACUNI_031...   499   e-139
 gi|150002860|ref|YP_001297604.1|  putative transport-related...   484   e-135
 gi|150006812|ref|YP_001301555.1|  putative transport-related...   421   e-116
 gi|154493627|ref|ZP_02032947.1|  hypothetical protein PARMER...   411   e-113


InterPro Summary:  InterProScan

InterPro
IPR013525
Domain
ABC-2 type transporter
PF01061 [128-348]T 5.50000018117376 PF01061 ABC2_membrane ABC2_membrane


COGS Summary:  COGS Search
BeTs to 6 clades of COG0842
COG name: Predicted integral membrane protein
Functional Class: S
The phylogenetic pattern of COG0842 is A-TK--VcEBR-UJ-------
Number of proteins in this genome belonging to this COG is 2
Blocks Summary:  Blocks Search
***** IPB000412 (ABC 2 transport system integral membrane protein) with a combined E-value of 8.2e-07.
    IPB000412    309-344


 ProDom Summary:  Protein Domain Search
Residues 44-372 are 23% similar to a (PROTEIN CONSERVED INTEGRAL MEMBRANE PUTATIVE) protein domain (PD041787 which is seen in Q9ZJD3_BBBBB.


Paralogs:  Local Blast Search
Residues 5-372 share 22% similarity with PG0081, a conserved hypothetical protein.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable signal  
1  
44
transmembrane  
20  
36
transmembrane  
179  
195
transmembrane  
240  
256
transmembrane  
271  
287
transmembrane  
300  
316
transmembrane  
361  
377

Top PDB Hits:
-44% similar to PDB:1EPW CRYSTAL STRUCTURE OF CLOSTRIDIUM NEUROTOXIN TYPE B (E_value = );
-44% similar to PDB:1F31 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH A TRISACCHARIDE (E_value = );
-44% similar to PDB:1G9A CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 3) (E_value = );
-44% similar to PDB:1G9B CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 1) (E_value = );
-44% similar to PDB:1G9C CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 4) (E_value = );

Gene Protein Sequence:
MFSDLFAIWRYELCKTFRDMGMVIFFIIVPLLYPLLYSYIYSHEVVRDVP
AMVVDRSNSTLSREYLRRVDATPEVSIVGHCTDMEEAKEQIRRRNAYGII
YVPEDFSEHLNTGRKAHISLYCDMSGLLYYKSLLIANTLVSLEMNKEIKI
ARSVGATERQGEIISYPIDYEDVALYNPTVGFASFLLPAVLILIIQQTLL
LGIGLSAGTARERNKFHDLVPTDISHYSGALRIVFGKGLAYLTIYVPVLC
YTLVIVPRMFGFIQLAEAMDLILFALPYLLACIFFAMSLSVVVRHRESCM
MIFVFTSVPLLFISGVSWPGASIPEGWRIVSHLFPSTFGINGYIKIKSMG
ANLREVNSEYMALWLHTILYFLTTCAIYYRQVRKNRRHIREADSLIAQGN
KEVLE

Gene Nucleotide Sequence:  Sequence Viewer
ATGTTCTCAGACCTCTTTGCCATATGGAGGTACGAGCTGTGCAAGACGTT
CAGAGACATGGGTATGGTCATCTTTTTCATCATAGTACCCCTCCTGTACC
CACTCCTCTACAGCTATATATACAGCCACGAAGTGGTACGCGATGTGCCG
GCCATGGTGGTGGACAGATCGAACTCGACACTGAGCCGCGAATACCTGCG
AAGGGTAGATGCCACACCCGAAGTAAGCATCGTAGGACACTGCACCGATA
TGGAAGAGGCCAAGGAGCAAATCCGCAGGCGCAATGCCTATGGCATCATC
TACGTTCCGGAGGATTTCTCCGAACATCTCAATACCGGCAGGAAGGCCCA
TATCTCTCTTTACTGCGATATGAGCGGATTGCTCTACTACAAAAGCCTGC
TCATTGCCAATACACTGGTTTCGCTGGAGATGAACAAAGAGATCAAGATA
GCGCGCAGCGTAGGAGCTACCGAGCGTCAGGGAGAGATCATCTCTTACCC
CATCGACTATGAAGACGTGGCACTGTATAACCCGACCGTCGGTTTCGCTT
CCTTCCTGCTACCTGCCGTACTCATCCTGATCATACAGCAGACGCTCCTG
CTCGGCATAGGACTCTCGGCCGGTACGGCGCGTGAGAGGAATAAGTTTCA
CGACCTCGTACCTACCGATATCAGCCACTACTCCGGCGCACTCCGTATCG
TCTTTGGCAAGGGGCTGGCCTATCTGACCATCTACGTGCCGGTACTATGC
TACACGCTGGTCATCGTACCACGCATGTTCGGCTTTATCCAGCTGGCAGA
AGCCATGGATCTGATTCTCTTTGCCCTGCCCTATCTGCTGGCTTGTATCT
TCTTCGCCATGTCGCTCTCTGTCGTGGTACGTCATCGGGAAAGCTGTATG
ATGATCTTCGTCTTTACTTCCGTACCGCTCCTTTTTATCTCCGGAGTGTC
GTGGCCCGGGGCATCCATACCGGAGGGTTGGCGCATTGTCTCTCATCTCT
TCCCATCCACATTCGGCATCAATGGATACATCAAAATCAAGTCCATGGGG
GCCAATCTGCGAGAGGTCAATAGCGAGTACATGGCTCTTTGGCTACACAC
GATCCTCTACTTCCTGACTACCTGCGCCATCTACTACCGTCAGGTACGTA
AGAACCGTCGCCACATTCGCGAAGCCGACTCTCTCATTGCACAAGGCAAC
AAAGAAGTCCTCGAA

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