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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0073 IGR0074 IGR0072 IGR0071 IGR0069 IGR0068 IGR0070 IGR0075 PG0076 PG0082 PG0081 PG0080 PG0083 mutS, - PG0084 PG0078 dps, - PG0079 PG0077 PG0076 PG0082 PG0081 PG0080 PG0083 mutS, - PG0084 PG0078 dps, - PG0079 PG0077 Type: tandem, Name: tan33 - 241 Type: tandem, Name: tan34 - 242 Type: tandem, Name: tan84 - 292 PG0076 PG0082 PG0081 PG0080 PG0083 mutS, - PG0084 PG0078 dps, - PG0079 PG0077


LANL Gene ID: PG0081

GenBank Locus Tag: PG0092

DNA Molecule Name:
1  

GenBank ID:
34539961

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
108688

Gene Stop:
107552

Gene Length:
1137

Molecular Weight*:
42624

pI*:
9.80

Net Charge*:
9.67

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0092

Proteomic Data: Proteomic Data Search
TIGR Annotationtransporter, putative, GroupS (transport and binding proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00922.330.0385.420.0423.030.00815.420.042
LANLPG00815.0442.868.1972.50
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
A few hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 17-330 are 26% similar to gb|AAF94762.1 from V. cholerae.

This sequence is similar to BT3903.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539961|ref|NP_904440.1|  transporter, putative [Porphyr...   691   0.0  
 gi|29349311|ref|NP_812814.1|  hypothetical protein BT_3903 [...   463   e-129
 gi|53715270|ref|YP_101262.1|  hypothetical protein BF3986 [B...   460   e-128
 gi|153809119|ref|ZP_01961787.1|  hypothetical protein BACCAC...   459   e-127
 gi|156111382|gb|EDO13127.1|  hypothetical protein BACOVA_011...   454   e-126
 gi|150002859|ref|YP_001297603.1|  hypothetical protein BVU_0...   425   e-117
 gi|156859682|gb|EDO53113.1|  hypothetical protein BACUNI_031...   424   e-117
 gi|150006811|ref|YP_001301554.1|  hypothetical protein BDI_0...   370   e-101
 gi|154493626|ref|ZP_02032946.1|  hypothetical protein PARMER...   235   4e-60
 gi|60682010|ref|YP_212154.1|  hypothetical protein BF2530 [B...   216   1e-54


InterPro Summary:  InterProScan

InterPro
IPR013525
Domain
ABC-2 type transporter
PF01061 [134-339]T 10.9999999702296 PF01061 ABC2_membrane ABC2_membrane


COGS Summary:  COGS Search
BeTs to 7 clades of COG0842
COG name: Predicted integral membrane protein
Functional Class: S
The phylogenetic pattern of COG0842 is A-TK--VcEBR-UJ-------
Number of proteins in this genome belonging to this COG is 2
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 8-338 are 21% similar to a (PROTEIN CONSERVED INTEGRAL MEMBRANE PUTATIVE) protein domain (PD041787 which is seen in O26021_HELPY.


Paralogs:  Local Blast Search
Residues 19-363 share 22% similarity with PG0080, a conserved hypothetical protein.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
25
transmembrane  
183  
199
transmembrane  
223  
239
transmembrane  
263  
279
transmembrane  
289  
305
transmembrane  
349  
365

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MRREVRQLTSRVLFLFCMVIAPVFCCLFFPSIMDMGLPQNLPAGIVDLDR
TQTSRTIARHLNSMEQTQIVKQFESVREARLAVQRGEIYGYYYIPEGMTR
DAYAQKQPKLSFYTNYAYMVGGSLLFRDNKMISELVAGAAARSQLYARGA
TESQAMDWLQPIVIDTHPIGNPWLNYSIYLSNIMIPGVLGLLIFMVTVCS
IAMEIKRSTAREWMETAGGSMSIALLGKLLPQTVAFMLIGTFIDVYLYGF
LSYPINGGFLPMLIVMYLFILACQGFGVLMFVTLPTMRLGLSFASLWGII
SFSICGASFPALGMPTVMQSASALFPLRHYYLSYVTSALDGFSLKYAWTN
ILAFVIFALLPLLLLRRLKHILLTYKYVS

Gene Nucleotide Sequence:  Sequence Viewer
ATGCGTAGAGAGGTGCGACAACTGACGAGTCGCGTCCTCTTCCTCTTCTG
CATGGTGATAGCTCCTGTCTTTTGCTGTCTCTTCTTCCCCTCCATCATGG
ATATGGGGTTGCCGCAGAACCTGCCTGCGGGTATTGTGGATCTCGATCGT
ACACAGACGTCGCGCACCATAGCACGCCACCTCAATTCGATGGAGCAAAC
CCAAATCGTCAAACAGTTCGAAAGCGTGCGTGAGGCTCGGCTGGCAGTAC
AGCGAGGCGAGATATACGGTTACTACTATATACCCGAGGGAATGACACGG
GATGCCTACGCACAGAAGCAGCCCAAGCTCTCCTTCTATACCAACTATGC
CTATATGGTGGGTGGCTCGCTCCTCTTCAGGGACAACAAGATGATCAGCG
AACTGGTAGCCGGTGCAGCCGCTCGTTCGCAACTTTATGCCCGAGGAGCC
ACCGAAAGCCAGGCCATGGACTGGCTACAGCCGATCGTTATCGACACGCA
CCCCATAGGCAATCCGTGGCTCAACTACTCCATCTACCTGAGCAATATCA
TGATACCCGGCGTACTGGGTCTGCTCATCTTCATGGTCACAGTGTGTAGC
ATAGCCATGGAGATCAAGAGATCGACAGCTCGAGAATGGATGGAGACGGC
CGGCGGCAGTATGTCCATCGCCCTTTTGGGCAAGCTGCTACCCCAAACCG
TGGCATTCATGCTCATCGGCACCTTTATAGACGTATATCTGTATGGCTTC
CTCTCCTACCCGATCAATGGCGGATTCTTGCCGATGCTGATAGTCATGTA
TCTCTTCATCCTCGCTTGTCAGGGTTTTGGCGTACTGATGTTCGTCACCC
TCCCGACGATGAGATTGGGACTTAGCTTTGCTTCCCTATGGGGCATTATC
TCTTTCTCCATATGCGGAGCCTCGTTTCCCGCTCTCGGTATGCCGACTGT
CATGCAGTCCGCCAGCGCGCTATTTCCGTTGAGGCACTACTATCTCTCTT
ATGTGACAAGTGCCCTTGATGGATTTTCCCTGAAATATGCTTGGACCAAT
ATCCTCGCTTTCGTCATCTTCGCATTGCTGCCGCTACTGCTCCTTCGCCG
GCTCAAGCACATACTCCTAACCTACAAATACGTCTCT

Los Alamos National Laboratory • Est 1943

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