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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap rRNA-16S-1 IGR0077 IGR0076 IGR0078 IGR0075 IGR0079 PG0088 PG0085 PG0083 pheT, - PG0086 mutS, - PG0084 PG0088 PG0085 PG0083 pheT, - PG0086 mutS, - PG0084 PG0088 PG0085 PG0083 pheT, - PG0086 mutS, - PG0084


LANL Gene ID: PG0085

GenBank Locus Tag: PG0097

DNA Molecule Name:
1  

GenBank ID:
161579534

Gene Name:


Definition:
conserved hypothetical protein (YEBC-related)

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
115838

Gene Stop:
115149

Gene Length:
690

Molecular Weight*:
26441

pI*:
4.40

Net Charge*:
-20.04

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:
Biological process
  GO:0015074    DNA integration

Molecular function
  GO:0003677    DNA binding
  GO:0008270    zinc ion binding
  GO:0008907    integrase activity


Pathway: pathway table

Comment:
TIGR ID: PG0097

Proteomic Data: Proteomic Data Search
TIGR Annotationconserved hypothetical protein TIGR01033, GroupJ (hypothetical proteins-Conserved)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG00973.0103.722.3e-136.0303.722.3e-13
LANLPG00858.0613.1965.52211.74
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous significant hits in gapped BLAST; e.g. residues 7-224 are 49% similar to gb|AAF60954.1|AF104936_2 unknown of Riemerella anatipestifer, residues 2-224 are 44% similar to gb|AAD05730.1| putative of Helicobacter pylori J99, residues 3-223 are 45% similar to emb|CAB73426.1| hypothetical protein of Campylobacter jejuni.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|49036523|sp|Q7MXR6|Y097_PORGI  UPF0082 protein PG_0097         405   e-111
 gi|34539965|ref|NP_904444.1|  hypothetical protein PG0097 [P...   404   e-111
 gi|154493686|ref|ZP_02033006.1|  hypothetical protein PARMER...   338   1e-91
 gi|150007873|ref|YP_001302616.1|  hypothetical protein BDI_1...   320   6e-86
 gi|53713855|ref|YP_099847.1|  hypothetical protein BF2564 [B...   283   6e-75
 gi|29346037|ref|NP_809540.1|  hypothetical protein BT_0627 [...   262   1e-68
 gi|156860837|gb|EDO54268.1|  hypothetical protein BACUNI_022...   260   4e-68
 gi|153806614|ref|ZP_01959282.1|  hypothetical protein BACCAC...   260   4e-68
 gi|150005971|ref|YP_001300715.1|  conserved hypothetical pro...   259   8e-68
 gi|156110010|gb|EDO11755.1|  hypothetical protein BACOVA_022...   259   9e-68


InterPro Summary:  InterProScan

InterPro
IPR002876
Family
Protein of unknown function DUF28
PD004323 [1-222]T 1e-107 PD004323 Y097_PORGI_Q7MXR6; Y097_PORGI_Q7MXR6;
PTHR12532 [1-224]T 2.9e-52 PTHR12532 UNCHARACTERIZED UNCHARACTERIZED
PF01709 [1-224]T 7.4e-98 PF01709 DUF28 DUF28
TIGR01033 [1-224]T 1.2e-69 TIGR01033 TIGR01033: conserved hypothetical protein T TIGR01033: conserved hypothetical protein T
InterPro
IPR003308
Domain
Integrase, N-terminal zinc-binding
G3DSA:1.10.10.200 [4-67]T 3.8e-16 G3DSA:1.10.10.200 no description no description
noIPR
unintegrated
unintegrated
G3DSA:3.30.1270.10 [67-224]T 5.6e-27 G3DSA:3.30.1270.10 no description no description


COGS Summary:  COGS Search
BeTs to 13 clades of COG0217
COG name: Uncharacterized ACR, YebC family
Functional Class: S
The phylogenetic pattern of COG0217 is ----yqvcEBrhujgpolinx
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** PF01709 (Domain of unknown function) with a combined E-value of 1.2e-52.
    PF01709B    25-56
    PF01709C    63-109
    PF01709E    196-223


 ProDom Summary:  Protein Domain Search
Residues 9-222 are 38% similar to a (PROTEIN INTERGENIC REGION RUVC-ASPS) protein domain (PD004323 which is seen in YEBC_CLOHI.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 1 to 224 (E-value = 8.6e-98) place PG0085 in the DUF28 family which is described as Domain of unknown function DUF28 (PF01709)

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
128  
156

Top PDB Hits:
-57% similar to PDB:1MW7 X-RAY STRUCTURE OF Y162_HELPY NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PR6 (E_value = 5.2E_39);
-52% similar to PDB:1LFP Crystal Structure of a Conserved Hypothetical Protein Aq1575 from Aquifex Aeolicus (E_value = 8.0E_32);
-52% similar to PDB:1KON CRYSTAL STRUCTURE OF E.COLI YEBC (E_value = 1.5E_30);

Gene Protein Sequence:
MKRWGNMARVFTKLGKEITIAAKEGGPDVETNPRLRILVQTAKKENMPKE
NVERAIKKATSKDYTDYKEMNYEGYGPYGIAIFVETATDNTTRTVANVRS
YFNKHGGSLGTSGSLEFLFQHKCVFHIVKKDDMDLESLELELIDYGVDEL
EEDENEIILYGDFSENSNIQKYLEDAGYEIASAEFVRIPNDTKEVTAEQR
EQIEKLIERIEEDEDVQNVFHNMKEEEGEE

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAACGCTGGGGCAATATGGCCCGCGTCTTCACCAAGTTAGGAAAGGA
AATCACCATCGCTGCCAAAGAAGGCGGCCCCGACGTGGAGACCAATCCGC
GTCTGCGTATCCTCGTGCAGACAGCCAAGAAGGAGAACATGCCGAAGGAG
AACGTGGAACGCGCCATCAAAAAAGCTACCTCCAAAGACTATACGGACTA
CAAAGAGATGAACTATGAGGGCTATGGTCCTTACGGCATCGCGATCTTCG
TGGAGACAGCTACGGACAATACCACACGTACCGTGGCCAATGTACGCAGC
TACTTCAACAAACATGGCGGATCGCTCGGTACTTCCGGCAGCTTGGAATT
CCTCTTCCAGCACAAATGCGTATTTCACATCGTCAAGAAAGACGATATGG
ATCTCGAAAGCCTTGAACTCGAACTGATAGACTACGGTGTGGACGAACTG
GAAGAGGACGAAAACGAGATCATTCTCTACGGTGACTTTTCGGAGAACTC
CAACATCCAGAAATATCTGGAAGATGCAGGCTATGAGATCGCTTCGGCCG
AATTCGTCCGCATACCCAACGATACGAAAGAGGTAACCGCCGAGCAGCGC
GAACAGATCGAGAAGCTCATCGAGCGAATCGAAGAAGACGAAGACGTGCA
AAACGTCTTCCACAATATGAAGGAAGAGGAGGGCGAGGAA

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