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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap rRNA-5S-1 rRNA-23S-1 IGR0083 IGR0084 IGR0085 IGR0082 IGR0081 IGR0080 IGR0079 PG0092 PG0096 PG0093 wecC, - PG0094 PG0095 capK, - PG0097 top3,topB, - PG0091 PG0092 PG0096 PG0093 wecC, - PG0094 PG0095 capK, - PG0097 top3,topB, - PG0091 PG0092 PG0096 PG0093 wecC, - PG0094 PG0095 capK, - PG0097 top3,topB, - PG0091


LANL Gene ID: PG0093

GenBank Locus Tag: PG0106

DNA Molecule Name:
1  

Genomic Island ID:
2

GenBank ID:
34539973

 Gene Name:


 Definition:
probable glycosyltransferase

 Cellular Location:
Inner membrane, Cytoplasm [Evidence]

 Gene Start:
128858

Gene Stop:
129991

Gene Length:
1134

Molecular Weight*:
42681

pI*:
8.90

Net Charge*:
6.20

EC:
 

 Functional Class:
Uncategorized  

 Gene Ontology:
Biological process
  GO:0006629    lipid metabolic process
  GO:0009252    peptidoglycan biosynthetic process

Cellular component
  GO:0016020    membrane

Molecular function
  GO:0003824    catalytic activity
  GO:0008963    phospho-N-acetylmuramoyl-pentapeptide-transferase activity


 Pathway: pathway table

 Comment:
TIGR ID: PG0106

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
A hit in gapped BLAST to a putative undecaprenyl-phosphate N-acetyl-glucosaminyl transferase from Lactobacillus delbrueckii
(AF320250). Residues 42-342 are 29% similar to this protein. A weaker hit observed to the teichoic acid linkage unit synthesis, tagO, of Bacillus subtilis: residues 19-339 are 26% similar to this protein. See also the llm protien of Staphylococcus aureus (D21131).

This sequence is similar to Smu0223 a predicted rgpG sequence.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539973|ref|NP_904452.1|  glycosyl transferase, group 4 ...   603   e-171
 gi|63107055|emb|CAI94402.1|  hypothetical protein [Porphyrom...   331   5e-89
 gi|63107056|emb|CAI94403.1|  hypothetical protein [Porphyrom...   239   2e-61
 gi|154492980|ref|ZP_02032606.1|  hypothetical protein PARMER...   231   7e-59
 gi|150008835|ref|YP_001303578.1|  putative LPS biosynthesis ...   226   2e-57
 gi|29346749|ref|NP_810252.1|  undecaprenyl-phosphate alpha-N...   223   1e-56
 gi|150009826|ref|YP_001304569.1|  putative LPS biosynthesis ...   217   8e-55
 gi|53714950|ref|YP_100942.1|  undecaprenyl-phosphate alpha-N...   213   2e-53
 gi|60682925|ref|YP_213069.1|  putative LPS biosynthesis rela...   213   2e-53
 gi|150004095|ref|YP_001298839.1|  undecaprenyl-phosphate alp...   212   3e-53


InterPro Summary:  InterProScan

InterPro
IPR000715
Family
Glycosyl transferase, family 4
PTHR22926 [40-375]T 4.3e-59 PTHR22926 PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE
PF00953 [105-271]T 1.5e-16 PF00953 Glycos_transf_4 Glycos_transf_4
InterPro
IPR003524
Family
Phospho-N-acetylmuramoyl-pentapeptide transferase
PS01348 [180-191]T 8e-5 PS01348 MRAY_2 MRAY_2
noIPR
unintegrated
unintegrated
PTHR22926:SF2 [40-375]T 4.3e-59 PTHR22926:SF2 GLYCOSYL TRANSFERASE GLYCOSYL TRANSFERASE
signalp [1-48]? NA signalp signal-peptide signal-peptide
tmhmm [21-39]? NA tmhmm transmembrane_regions[71-91]? NA tmhmm transmembrane_regions[106-126]? NA tmhmm transmembrane_regions[165-185]? NA tmhmm transmembrane_regions[190-209]? NA tmhmm transmembrane_regions[215-235]? NA tmhmm transmembrane_regions[250-270]? NA tmhmm transmembrane_regions[276-296]? NA tmhmm transmembrane_regions[320-340]? NA tmhmm transmembrane_regions[346-368]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
BeTs to 12 clades of COG0472
COG name: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase
Functional Class: M
The phylogenetic pattern of COG0472 is -mTkyQVCEBRHUJ--olinX
Number of proteins in this genome belonging to this COG is 2
Blocks Summary:  Blocks Search
***** PF00953 (Glycosyl transferase) with a combined E-value of 5.5e-16.
    PF00953A    109-135
    PF00953B    180-191
    PF00953C    232-264


 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
Residues 23-302 are 24% similar to PG0519, a predicted phospho-N-acetylmuramoyl pentapeptide transferase.

Pfam Summary:  Pfam Search
Residues 105 to 271 (E-value = 1.3e-16) place PG0093 in the Glycos_transf_4 family which is described as Glycosyl transferase (PF00953)

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
21  
37
transmembrane  
21  
38
transmembrane  
71  
87
transmembrane  
71  
93
transmembrane  
105  
121
transmembrane  
105  
123
transmembrane  
137  
154
transmembrane  
142  
158
transmembrane  
166  
184
transmembrane  
169  
185
transmembrane  
194  
210
transmembrane  
195  
219
transmembrane  
214  
230
transmembrane  
253  
270
transmembrane  
254  
270
transmembrane  
275  
294
transmembrane  
279  
295
transmembrane  
326  
343
transmembrane  
327  
343
transmembrane  
348  
365
transmembrane  
352  
368

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
VGYVIEDIVVMCKFQGWAEEMILFLLLLFATSILSYIALRRLSRMVYAQS
VFDQENERTVHKGAIPRLGGVIFFPVITLTVSLFLAINSVLRISIHFPLE
EFYDLLFLLPAMILLYAIGVIDDLVGLSYRQKFKAQILSSSILFLSGVSL
SGLDGLLFIEELPKILQYPIVVFFFLMVINSINLIDGIDGLATSLVLLGM
LFYIPFFIYVNMYLYVIICVSVIGCLGAFLRMNLYGTTEKRTKIFMGDTG
SLTLGLLLSFMALRLLTPIANTALPLPYVVAPLLIPCFDLFHVFVLRILS
KKNPFKPDKSHIHHRLMALGLTQRQTLVVILLYSIAFSLFNIFGYPFFNI
NVLLLLDIVIWITSNMLIANLSRKRGCV

Gene Nucleotide Sequence:  Sequence Viewer
GTGGGGTATGTTATTGAAGATATTGTTGTGATGTGTAAATTTCAGGGATG
GGCAGAAGAGATGATTCTTTTTCTGTTGCTTTTATTTGCGACCTCAATCC
TTTCTTACATTGCTTTGCGTCGATTGTCTCGTATGGTGTATGCTCAAAGT
GTTTTTGATCAAGAAAATGAAAGAACGGTACATAAAGGGGCTATACCCAG
GTTAGGTGGTGTCATATTCTTTCCTGTAATAACATTGACAGTATCCCTTT
TCTTAGCAATAAATAGTGTGCTAAGGATATCCATACACTTTCCTTTAGAA
GAATTCTATGATCTTCTGTTCCTGTTGCCTGCGATGATTTTACTATACGC
TATCGGTGTGATAGATGACTTGGTCGGACTATCTTATCGGCAAAAGTTCA
AAGCTCAAATTCTCTCTTCCTCTATTTTGTTCTTATCGGGAGTCAGTCTT
TCCGGTTTAGATGGTTTGTTATTCATAGAAGAGTTGCCTAAGATCTTACA
ATATCCGATAGTGGTGTTCTTTTTCCTCATGGTAATCAATAGTATAAATC
TAATTGATGGAATCGATGGATTGGCTACAAGTCTGGTGCTTCTGGGGATG
TTATTTTATATACCATTCTTTATCTATGTCAATATGTATTTATATGTAAT
AATCTGTGTGTCTGTTATTGGTTGCTTGGGAGCTTTTCTTCGGATGAATC
TTTATGGTACAACTGAGAAGCGAACAAAGATTTTCATGGGAGATACGGGA
TCTTTAACTTTAGGCCTTCTTTTGAGCTTTATGGCCTTACGCTTGCTTAC
CCCCATTGCAAATACTGCTTTACCTCTTCCATATGTAGTAGCTCCGCTAC
TTATTCCTTGTTTCGATTTATTCCATGTTTTTGTATTGAGAATTTTATCA
AAGAAAAATCCTTTTAAACCTGATAAGAGTCATATTCATCATAGACTTAT
GGCTTTGGGGTTGACGCAGAGACAAACACTGGTTGTCATATTACTATACT
CTATCGCGTTCTCTTTGTTTAATATCTTTGGGTACCCATTTTTTAATATC
AATGTGCTGCTTCTGCTGGATATCGTCATATGGATCACATCCAATATGCT
TATAGCCAATCTTTCGCGCAAAAGGGGATGTGTC

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