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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0083 IGR0087 IGR0084 IGR0085 IGR0086 IGR0082 IGR0081 IGR0080 PG0092 PG0098 PG0099 PG0096 PG0093 PG0100 wecC, - PG0094 PG0095 capK, - PG0097 top3,topB, - PG0091 PG0092 PG0098 PG0099 PG0096 PG0093 PG0100 wecC, - PG0094 PG0095 capK, - PG0097 top3,topB, - PG0091 Type: tandem, Name: tan29 - 237 PG0092 PG0098 PG0096 PG0093 PG0100 wecC, - PG0094 PG0095 capK, - PG0097 top3,topB, - PG0091 PG0099


LANL Gene ID: PG0095

GenBank Locus Tag: PG0109

DNA Molecule Name:
1  

Genomic Island ID:
2

GenBank ID:
34539975

 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Inner membrane, Cytoplasm [Evidence]

 Gene Start:
131471

Gene Stop:
132691

Gene Length:
1221

Molecular Weight*:
46473

pI*:
10.50

Net Charge*:
15.35

EC:
 

 Functional Class:
Unknown  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293

 Comment:
TIGR ID: PG0109

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Matches in gapped BLAST to 24473746 from Streptococcus thermophilus.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539975|ref|NP_904454.1|  hypothetical protein PG0109 [P...   684   0.0


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
signalp [1-22]? NA signalp signal-peptide signal-peptide
tmhmm [5-25]? NA tmhmm transmembrane_regions[31-49]? NA tmhmm transmembrane_regions[111-131]? NA tmhmm transmembrane_regions[150-170]? NA tmhmm transmembrane_regions[185-203]? NA tmhmm transmembrane_regions[209-227]? NA tmhmm transmembrane_regions[232-252]? NA tmhmm transmembrane_regions[328-348]? NA tmhmm transmembrane_regions[358-378]? NA tmhmm transmembrane_regions[384-404]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
28
transmembrane  
7  
24
transmembrane  
29  
46
transmembrane  
85  
102
transmembrane  
114  
133
transmembrane  
116  
132
transmembrane  
153  
173
transmembrane  
189  
205
transmembrane  
192  
216
transmembrane  
207  
223
transmembrane  
227  
246
transmembrane  
232  
248
transmembrane  
333  
351
transmembrane  
337  
353
transmembrane  
375  
397
transmembrane  
382  
398

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MRGYLGYILCFTIYFVLHYIEGFPPVFGMPIAQLWKLPLLAYLLFLSIQS
KRRKYALEKSSYWMALQSSLNIESILNPIYSVTHGMKQLPLALFFRFWLV
KFSNRVDRLEFFLYTLAQFVLLASLLVLVGIVSPVEDFLSADAFGIEGAV
YYSGIFGAPHAASSYFAASILVLTNGFRLNKFRTSFQKGFNASLIVVGLI
SVFQAYVRTGWLMLLVALVILMLPRKITIHHLVKFSFLIGLVGVALVYFY
NTNEQFQARITGRNVHTNASAEGMDLKGSGRTSFWVNGIEGWSEGNIYEF
LLGQGYTQVVERNFQKTGMRVFSHNQFVNALAEHGFIGLVLLLLFYLSIY
RLIRANRFSPYYHLSLSLFWSAVLFSFFQNEMYFDYAVIFSLALVLLVTS
SHRIKNV

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGAGGCTATTTAGGTTATATTCTCTGCTTCACGATTTACTTTGTCTT
GCACTACATTGAAGGATTCCCTCCAGTGTTTGGTATGCCTATTGCACAGT
TATGGAAGCTTCCATTACTAGCCTACCTTTTATTCCTATCAATACAGAGT
AAAAGGAGGAAATACGCATTAGAAAAGAGTAGTTATTGGATGGCTCTACA
GAGTAGCCTAAACATTGAATCGATTCTCAATCCGATCTATTCTGTTACAC
ATGGTATGAAGCAATTACCTCTCGCTCTCTTTTTTCGTTTTTGGTTGGTT
AAATTCTCTAATCGAGTTGATCGGCTCGAATTCTTCCTTTATACCTTAGC
CCAATTTGTACTTCTTGCATCACTTTTAGTACTTGTGGGGATTGTATCTC
CAGTGGAAGACTTTTTATCTGCTGATGCTTTTGGAATTGAGGGGGCAGTT
TATTATTCTGGAATTTTTGGAGCTCCTCATGCGGCATCCTCCTACTTCGC
CGCATCAATCCTCGTTCTAACAAACGGATTTAGACTGAATAAATTTAGGA
CGTCATTTCAGAAGGGTTTCAATGCTTCTCTGATTGTAGTAGGATTAATT
TCTGTTTTTCAGGCCTATGTCCGTACAGGCTGGTTGATGCTTCTTGTTGC
TCTGGTTATTCTAATGCTTCCTCGTAAAATTACTATTCATCACTTGGTTA
AATTTTCATTTTTGATAGGCTTAGTTGGTGTTGCTCTTGTTTATTTCTAT
AATACCAACGAGCAGTTTCAGGCAAGGATAACTGGGCGCAATGTGCATAC
TAATGCTTCTGCAGAAGGAATGGATTTAAAAGGATCTGGACGTACTTCTT
TTTGGGTGAATGGGATAGAAGGATGGAGTGAGGGTAATATTTATGAATTT
CTGTTGGGACAGGGGTATACTCAAGTTGTTGAGCGTAATTTTCAGAAGAC
TGGCATGCGAGTTTTCTCACACAATCAGTTTGTGAACGCTCTTGCTGAGC
ATGGGTTTATTGGTCTTGTTTTGTTGTTGCTGTTTTATCTATCAATCTAC
CGCTTAATTCGTGCAAATAGGTTTTCTCCGTATTACCACTTGAGCCTTTC
TTTATTTTGGTCAGCCGTATTATTCTCTTTTTTTCAGAATGAGATGTATT
TTGATTACGCTGTAATTTTTTCTTTAGCTCTTGTATTGCTTGTTACTAGT
AGTCATCGCATTAAGAATGTT

Los Alamos National Laboratory • Est 1943

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