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Record: 1 of 1 MiniMap

LANL Gene ID: PG0096GenBank Locus Tag: PG0110DNA Molecule Name: 1 Genomic Island ID: 2 GenBank ID: 34539976 Gene Name: Definition: conserved hypothetical protein (possible transferase) Cellular Location: Inner membrane, Cytoplasm [Evidence] Gene Start: 132731 Gene Stop: 133768 Gene Length: 1038 Molecular Weight*: 39196 pI*: 8.70 Net Charge*: 5.27 EC: Functional Class: Unknown; Conserved hypothetical Gene Ontology: Biological process GO:0009058 biosynthetic process Pathway: pathway table Primary Evidence: Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ. Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis. J Bacteriol. 2004 Aug;186(16):5473-9. PMID: 15292149 Comment: Results from gapped BLAST revealed no significant hits to the first 110 amino acids. TIGR ID: PG0110. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277. Human Oral Microbiome Database: View in HOMD Genome Viewer Blast Summary: PSI-Blast Search Two weak hits in gapped BLAST: residues 151-296 are 28% similar to residues 288-423 of a probable glycosyl transferase from Pseudomonas aeruginosa (AE004568). Residues 138-311 are 26% similar to a predicted transmembrane protein from Streptococcus pneumoniae (AJ006986). Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|34539976|ref|NP_904455.1| glycosyl transferase, group 1 ... 714 0.0 gi|125974824|ref|YP_001038734.1| glycosyl transferase, grou... 134 9e-30 gi|42784436|ref|NP_981683.1| glycosyl transferase, group 1 ... 117 1e-24 gi|15596586|ref|NP_250080.1| probable glycosyl transferase ... 60 3e-07 gi|23124609|ref|ZP_00106588.1| COG0438: Glycosyltransferase... 59 3e-07 gi|154493001|ref|ZP_02032627.1| hypothetical protein PARMER... 59 5e-07 gi|123966615|ref|YP_001011696.1| hypothetical protein P9515... 59 6e-07 gi|89210025|ref|ZP_01188418.1| Glycosyl transferase, group ... 59 6e-07 gi|106885169|ref|ZP_01352533.1| Glycosyl transferase, group... 57 2e-06 gi|90961966|ref|YP_535882.1| Glycosyltransferase [Lactobaci... 55 9e-06 InterPro Summary: InterProScan

InterPro
IPR001296
Domain

Glycosyl transferase, group 1
PF00534		Glycos_transf_1

noIPR
unintegrated

unintegrated
PTHR12526		PTHR12526
PTHR12526:SF7		PTHR12526:SF7
SSF53756		SSF53756

COGS Summary: COGS Search BeTs to 11 clades of COG0438 COG name: Glycosyltransferases I Functional Class: M The phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---X Number of proteins in this genome belonging to this COG is 9 Blocks Summary: Blocks Search ***** PF00534 (Glycosyl transferases group 1) with a combined E-value of 1.7e-06. PF00534B 251-286 ProDom Summary: Protein Domain Search No significant hit to the ProDom database. Paralogs: Local Blast Search No paralogs found in P. gingivalis. Pfam Summary: Pfam Search Residues 153 to 326 (E-value = 1.2e-06) place PG0096 in the Glycos_transf_1 family which is described as Glycosyl transferases group 1 (PF00534) Structural Feature(s): Feature Type Start Stop uncleavable signal 1 17 transmembrane 260 276 Top PDB Hits: -46% similar to PDB:1NM8 Structure of Human Carnitine Acetyltransferase: Molecular Basis for Fatty Acyl Transfer (E_value = ); -46% similar to PDB:1S5O Structural and Mutational Characterization of L-carnitine Binding to Human carnitine Acetyltransferase (E_value = ); -42% similar to PDB:2GCJ Crystal Structure of the Pob3 middle domain (E_value = ); -42% similar to PDB:2GCL Structure of the Pob3 Middle domain (E_value = ); -48% similar to PDB:2OUV crystal structure of pde10a2 mutant of D564N (E_value = ); Gene Protein Sequence: MYQLLFIGGLGAAHEFGGELTKNKFLTKRLRDFVDKLIIVDTYRSRSKPW RLWKLPFILLINPNTPIIFSTSYGNVYWLHRILKVVFPKRKIVLWVIGGD LHLEVEKGRYRVDVLKSLQYLLVEGQAMKDALCGQGVENVKVMPNFKDIS LFSPLHCHTPYTPSKVLRLVFFSRIMPDKGCDLILDLAHKLNERGYKDKF VIDFYGPIAPDYSKRFSSILDTLPNVHYQGTLDLLSGAGYVTLASYHLTL FPTFWSGEGFPGVIVDSFISGLPILASDWGLNKELVDKETGFVVPAHNTT DMLSIVSDVINGGIDLEPLAQTARQRATNYDVNHLITNDLIVEIFK Gene Nucleotide Sequence: Sequence Viewer ATGTATCAATTGCTTTTTATCGGGGGCTTAGGAGCTGCCCATGAATTTGG AGGAGAATTGACTAAAAATAAATTCCTAACGAAAAGGCTTAGGGACTTTG TTGACAAACTAATTATAGTTGATACCTATCGGAGTCGTTCTAAGCCTTGG CGATTGTGGAAATTGCCTTTTATCTTATTAATAAATCCCAATACTCCCAT AATTTTCTCAACTAGTTATGGCAATGTGTATTGGTTGCACCGTATTTTGA AAGTTGTCTTTCCTAAGCGTAAGATTGTTCTTTGGGTAATAGGGGGGGAT CTTCATTTAGAAGTTGAGAAGGGAAGATACCGAGTTGATGTTTTGAAAAG TTTGCAATATCTTTTGGTCGAAGGGCAAGCAATGAAAGATGCTTTGTGTG GGCAAGGTGTAGAGAATGTAAAAGTTATGCCTAACTTCAAGGACATATCT CTGTTTTCTCCCTTGCATTGTCATACTCCCTATACTCCATCCAAGGTGTT GCGTCTTGTCTTTTTCTCTCGTATCATGCCTGATAAAGGTTGTGATTTGA TTTTGGATTTAGCTCATAAATTGAATGAGAGAGGCTACAAGGATAAATTT GTCATTGACTTTTACGGCCCTATAGCTCCCGATTATAGCAAGAGGTTTAG CTCTATACTTGATACGTTACCCAATGTACACTACCAGGGAACCCTTGATT TACTATCTGGGGCTGGATATGTTACACTGGCATCTTATCATCTGACTCTA TTCCCAACCTTTTGGTCTGGAGAGGGTTTCCCAGGAGTCATTGTGGACTC TTTCATCTCAGGTTTGCCTATATTGGCCTCTGATTGGGGGCTAAACAAGG AACTTGTGGATAAAGAAACCGGCTTTGTCGTACCGGCTCACAACACGACT GACATGCTATCGATTGTATCAGATGTCATAAATGGAGGGATCGACTTAGA ACCATTGGCACAAACTGCTCGACAACGAGCGACGAACTATGACGTTAATC ATTTGATTACAAATGACCTAATAGTAGAAATTTTTAAG Los Alamos National Laboratory • Est 1943 Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy

`Feature Type`	`Start`	`Stop`
`uncleavable signal`	`1`	`17`
`transmembrane`	`260`	`276`