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Record: 1 of 1 MiniMap

LANL Gene ID: PG0097GenBank Locus Tag: PG0111DNA Molecule Name: 1 Genomic Island ID: 2 GenBank ID: 34539977 Gene Name: capK Definition: possible CAPK protein Cellular Location: Cytoplasm [Evidence] Gene Start: 133820 Gene Stop: 135085 Gene Length: 1266 Molecular Weight*: 48848 pI*: 8.10 Net Charge*: 3.72 EC: Functional Class: Uncategorized Gene Ontology: Biological process GO:0008152 metabolic process Molecular function GO:0003824 catalytic activity Pathway: pathway table Primary Evidence: Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ. Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis. J Bacteriol. 2004 Aug;186(16):5473-9. PMID: 15292149 Comment: TIGR ID: PG0111. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277. Proteomic Data: Proteomic Data Search

TIGR Annotation		capsular polysacharride biosynthesis gene, putative, GroupC (cell envelope)
ORF #		PG-PP/PG-PPC1				PG-PP/PG-PPC2
		Spectral Count		Peptide Intensity		Spectral Count		Peptide Intensity
		Pro	qVal	Pro	qVal	Pro	qVal	Pro	qVal
TIGR	PG0111	2.33	0.038	6.75	0	3.03	0.0081	6.75	0
LANL	PG0097	5.04		107.76		8.19		182.27
Consensus		SP1		IP1		SP2		IP2

Human Oral Microbiome Database: View in HOMD Genome Viewer Blast Summary: PSI-Blast Search Few weak hits in gapped BLAST to the predicted capK protein. Residues 53-413 are 24% similar to residues 70-439 of the V.cholerae protein (AE004175). Residues 37-410 are 23% similar to capK protein from Staphylococcus aureus (gbAAA64650.1). Also one very weak hit to IAA-lysine synthetase from Pseudomonas syringae (M35373). Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|34539977|ref|NP_904456.1| capsular polysacharride biosyn... 831 0.0 gi|110801005|ref|YP_694927.1| putative capK protein [Clostr... 136 2e-30 gi|116750753|ref|YP_847440.1| Coenzyme F390 synthetase-like... 132 6e-29 gi|116217531|ref|ZP_01483329.1| hypothetical protein VchoR_... 120 2e-25 gi|126180251|ref|YP_001048216.1| capsular polysaccharide bi... 120 2e-25 gi|147673380|ref|YP_001216400.1| putative capK protein [Vib... 114 1e-23 gi|15640940|ref|NP_230571.1| capK protein, putative [Vibrio... 114 1e-23 gi|121728045|ref|ZP_01681083.1| capK protein, putative [Vib... 114 2e-23 gi|153213832|ref|ZP_01949038.1| capK protein, putative [Vib... 113 2e-23 gi|150424457|gb|EDN16394.1| capK protein, putative [Vibrio ... 112 3e-23 InterPro Summary: InterProScan InterPro IPR000873 Domain AMP-dependent synthetase and ligase PF00501 AMP-binding noIPR unintegrated unintegrated G3DSA:3.40.50.980 G3DSA:3.40.50.980 SSF56801 SSF56801 COGS Summary: COGS Search No hit to the COGs database. Blocks Summary: Blocks Search No significant hit to the Blocks database. ProDom Summary: Protein Domain Search Residues 177-314 are 24% similar to a (INDOLEACETATE--LYSINE LIGASE EC 6.3.2.20) protein domain (PD138702 which is seen in IAAL_PSESS. Residues 37-416 are 21% similar to a (CAPK PROTEIN) protein domain (PD141484 which is seen in CAPK_STAAU. Paralogs: Local Blast Search No paralogs found in P. gingivalis. Pfam Summary: Pfam Search No significant hits to the Pfam 11.0 database Structural Feature(s): Feature Type Start Stop No predicted structural features. Top PDB Hits: -48% similar to PDB:1N05 Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold (E_value = ); -48% similar to PDB:1N06 Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold (E_value = ); -48% similar to PDB:1N07 Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold (E_value = ); -48% similar to PDB:1N08 Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold (E_value = ); -53% similar to PDB:2FC9 Solution structure of the RRM_1 domain of NCL protein (E_value = ); Gene Protein Sequence: MLNNASYRLKYWLRKAVKWMPAYRKTYREAHVVSSREQQEHLFWELLKYV IVHVPYYRDYQKFLGGNVQIEDLPIVKKEDVAKDALSFVSDEFNPEKLLR VSTGGTTGTSTNIYTSWLDGVRQTAYIDAAIDLGRVSNPIICTLREHDLK ATEKYRFWGNRLMLSPSNMNKDSLEYYVDLMRRYRVNILHCYPSSLMVLC KLLQNTQVNLDIEAILVSSEIVSSELKHIVREVFPRATFINVYAQTENVA RGISLNAAPFEFLSCKYLVEFLDTGERRDGNIIAEIVGTNLEKKSMPLIR FATGDYAVLNQRGEVIDILGRTSEYLIDKFGNPIPCIVTNRPHTLDNVLL AQYYQEKIGEFEYRVMVNENFNSNDIRAIEEDIKLNFGDGLFARVVVVTQ MEKTSRGKHRKLVQRLDLSLYL Gene Nucleotide Sequence: Sequence Viewer ATGCTTAATAATGCCTCCTACCGTCTAAAATACTGGCTTAGAAAAGCAGT TAAATGGATGCCTGCCTATAGAAAAACTTATAGGGAAGCACATGTAGTAT CATCACGAGAGCAACAAGAGCATCTGTTTTGGGAATTGCTCAAGTATGTT ATTGTACATGTCCCTTACTACAGAGATTATCAAAAGTTCCTCGGAGGGAA TGTTCAAATTGAAGATTTACCTATAGTCAAAAAGGAAGATGTAGCCAAGG ATGCTTTAAGTTTTGTTTCCGATGAGTTTAATCCAGAGAAACTCTTACGA GTATCTACTGGAGGTACTACAGGTACATCAACCAATATCTATACCTCATG GTTGGATGGGGTGCGTCAGACGGCTTATATTGATGCTGCAATAGATCTAG GGCGTGTTTCTAATCCTATTATTTGCACTCTAAGGGAGCATGACCTTAAG GCAACGGAGAAGTATCGTTTTTGGGGAAATCGTTTGATGCTATCGCCCTC CAATATGAATAAGGATAGCTTGGAATATTATGTTGATCTTATGCGGAGGT ATAGGGTGAATATATTACATTGCTATCCTTCGTCATTGATGGTGCTTTGC AAATTGCTCCAAAATACTCAGGTTAATCTTGATATTGAGGCTATTTTAGT TAGTTCAGAAATAGTTTCTTCAGAGCTAAAGCATATTGTTAGAGAAGTAT TCCCTAGAGCTACTTTTATCAATGTATATGCACAAACAGAAAATGTTGCA CGAGGTATTAGTTTGAATGCAGCACCTTTTGAGTTCTTGTCTTGTAAGTA TTTAGTAGAGTTTTTAGACACGGGAGAGAGAAGGGATGGTAATATCATTG CCGAAATTGTGGGAACAAATCTGGAGAAGAAGAGTATGCCTTTGATAAGG TTTGCGACTGGTGATTATGCTGTCCTAAATCAGAGAGGTGAGGTTATTGA TATCCTAGGCCGTACAAGTGAGTATCTGATTGATAAGTTTGGTAATCCGA TTCCTTGTATTGTTACTAATAGACCTCATACTCTTGATAATGTACTTTTA GCTCAGTACTACCAAGAGAAGATAGGAGAGTTTGAATATCGTGTCATGGT GAATGAGAATTTCAATAGTAATGATATTCGTGCTATAGAAGAAGATATTA AGCTGAATTTTGGAGATGGGCTGTTCGCAAGGGTCGTTGTTGTGACACAA ATGGAGAAAACCTCCAGAGGTAAACATCGTAAACTTGTTCAGAGACTAGA TTTAAGTTTGTATTTA Los Alamos National Laboratory • Est 1943 Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy

`Feature Type`	`Start`	`Stop`
`No predicted structural features.`