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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0083 IGR0087 IGR0084 IGR0085 IGR0088 IGR0086 cysE, - PG0100.1 PG0098 PG0099 PG0096 PG0100 wecC, - PG0094 PG0095 capK, - PG0097 PG0102 cysE, - PG0100.1 PG0098 PG0099 PG0096 PG0100 wecC, - PG0094 PG0095 capK, - PG0097 PG0102 Type: tandem, Name: tan29 - 237 cysE, - PG0100.1 PG0098 PG0099 PG0096 PG0100 wecC, - PG0094 PG0095 capK, - PG0097 PG0102 PG0101 PG0101


LANL Gene ID: PG0098

GenBank Locus Tag: PG0112

DNA Molecule Name:
1  

Genomic Island ID:
2

GenBank ID:


 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
135230

Gene Stop:
136027

Gene Length:
798

Molecular Weight*:
30228

pI*:
5.20

Net Charge*:
-7.87

EC:
 

 Functional Class:
Unknown; Conserved hypothetical  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.
Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.
J Bacteriol. 2004 Aug;186(16):5473-9.
PMID: 15292149

 Comment:
TIGR ID: PG0112. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.

 Proteomic Data: Proteomic Data Search
TIGR Annotationconserved hypothetical protein, authentic frameshift, GroupJ (hypothetical proteins-Conserved)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0112-0.140.36
LANLPG00980.910.02
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
A single hit in gapped BLAST to a hypothetical protein from V.cholerae, gbAAF96890.1. Residues 2-265 are 43% similar to this protein.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|150004781|ref|YP_001299525.1|  hypothetical protein BVU_2...   305   1e-81
 gi|149280424|ref|ZP_01886544.1|  hypothetical protein PBAL39...   275   2e-72
 gi|86135555|ref|ZP_01054136.1|  hypothetical protein MED152_...   270   9e-71
 gi|126662232|ref|ZP_01733231.1|  hypothetical protein FBBAL3...   268   2e-70
 gi|88710915|ref|ZP_01105003.1|  hypothetical protein FB2170_...   263   6e-69
 gi|89891123|ref|ZP_01202631.1|  putative amidinotransferase ...   262   1e-68
 gi|146298129|ref|YP_001192720.1|  Uncharacterized protein co...   261   4e-68
 gi|120437140|ref|YP_862826.1|  hypothetical protein GFO_2805...   251   4e-65
 gi|88803717|ref|ZP_01119241.1|  hypothetical protein PI23P_0...   248   2e-64
 gi|86131703|ref|ZP_01050300.1|  hypothetical protein MED134_...   247   5e-64


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
Residues 2-265 are 46% similar to PG1121, a conserved hypothetical protein.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
154  
170

Top PDB Hits:
-42% similar to PDB:2B64 30S ribosomal subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex. This file contains the 30S subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex". The entire crystal structure contains one 70S ribosome, tRNAs, mRNA and release factor RF1 and is described in remark 400. (E_value = );
-63% similar to PDB:1DGJ CRYSTAL STRUCTURE OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 (E_value = );
-44% similar to PDB:1JWK Murine Inducible Nitric Oxide Synthase Oxygenase Dimer (Delta 65) with W457A Mutation at Tetrahydrobiopterin Binding Site (E_value = );
-39% similar to PDB:1XX1 Structural basis for ion-coordination and the catalytic mechanism of sphingomyelinases D (E_value = );
-39% similar to PDB:2F9R Crystal structure of the inactive state of the Smase I, a sphingomyelinase D from Loxosceles laeta venom (E_value = );

Gene Protein Sequence:
LALSEFRNMVEIPRSKEIEVEVIQDTLEPHTPDSIFSNNWISFHEDGTVV
TYPMFAVNRRAERREEIIQCLQERGLLVKRRIDYSEAEIAQVFLEGTGSM
VLDRKYRRAYACLSARTNKELFLRFCNDLGYKPICFDAVHPVGEGMLPIY
HTNVMMAIGTAYAVICLESITNLEQRARVVQELETTGHEIVEISFEQMNQ
FAGNMLEVKAKDGRLYLCMSQSAYDALSVEDRTRLAKHTTLLSAPIPTIE
TLGGGSVRCMMAELFN

Gene Nucleotide Sequence:  Sequence Viewer
TTGGCTCTTTCGGAGTTTCGAAATATGGTAGAGATTCCTCGAAGCAAGGA
GATTGAAGTTGAAGTTATACAAGATACTCTCGAGCCTCATACTCCTGATT
CGATCTTCTCTAATAATTGGATTTCCTTTCATGAAGATGGTACGGTCGTA
ACCTATCCAATGTTTGCAGTCAATAGACGGGCAGAGCGTCGGGAGGAGAT
TATACAATGTCTACAAGAAAGAGGACTACTTGTTAAGAGACGCATAGATT
ATTCCGAAGCTGAGATTGCTCAAGTCTTTCTCGAAGGAACTGGTAGTATG
GTACTAGATCGCAAGTATCGACGTGCTTATGCCTGTCTCTCCGCTCGGAC
AAATAAGGAGTTATTCCTTCGTTTCTGTAATGATCTAGGGTACAAACCAA
TCTGTTTTGATGCCGTACATCCTGTCGGCGAGGGTATGTTGCCGATCTAT
CACACCAATGTTATGATGGCTATTGGGACTGCCTATGCAGTGATTTGTTT
GGAGAGCATCACAAACCTAGAGCAAAGGGCTAGGGTTGTACAAGAACTTG
AGACGACAGGACACGAGATTGTTGAGATTTCTTTTGAGCAGATGAATCAG
TTTGCGGGTAATATGCTTGAGGTAAAGGCTAAAGATGGTCGTTTGTATCT
ATGTATGTCTCAGTCGGCTTATGATGCTCTTTCTGTGGAAGACAGAACTA
GACTGGCCAAGCATACAACACTCCTTTCTGCTCCAATCCCAACCATTGAA
ACATTGGGTGGTGGGAGCGTGCGTTGTATGATGGCAGAACTCTTTAAC

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