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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0089 IGR0087 IGR0090 IGR0084 IGR0085 IGR0088 IGR0086 cysE, - PG0100.1 wecG, - PG0104 PG0098 PG0099 PG0096 PG0103 PG0100 PG0095 capK, - PG0097 PG0102 cysE, - PG0100.1 wecG, - PG0104 PG0098 PG0099 PG0096 PG0103 PG0100 PG0095 capK, - PG0097 PG0102 Type: tandem, Name: tan29 - 237 cysE, - PG0100.1 PG0098 PG0099 PG0103 PG0100 PG0095 capK, - PG0097 PG0102 PG0101 PG0101 wecG, - PG0104 PG0096


LANL Gene ID: PG0100

GenBank Locus Tag: PG0114

DNA Molecule Name:
1  

Genomic Island ID:
2

GenBank ID:
34539979

 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
136919

Gene Stop:
138055

Gene Length:
1137

Molecular Weight*:
43526

pI*:
7.60

Net Charge*:
2.73

EC:
 

 Functional Class:
Unknown  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.
Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.
J Bacteriol. 2004 Aug;186(16):5473-9.
PMID: 15292149

 Comment:
TIGR ID: PG0114. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
This protein shows 33% similarity over ~200 residues to Magnetococcus sp. MC-1 (gi22999591) and 24% similarity over the entire sequence to Cytophaga hutchinsonii (gi23134905).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539979|ref|NP_904458.1|  hypothetical protein PG0114 [P...   783   0.0  
 gi|117924455|ref|YP_865072.1|  hypothetical protein Mmc1_115...   113   2e-23
 gi|150005464|ref|YP_001300208.1|  hypothetical protein BVU_2...    88   8e-16
 gi|60680297|ref|YP_210441.1|  hypothetical protein BF0741 [B...    87   2e-15
 gi|90407867|ref|ZP_01216043.1|  hypothetical protein PCNPT3_...    86   3e-15
 gi|119944200|ref|YP_941880.1|  hypothetical protein Ping_042...    84   2e-14
 gi|110639165|ref|YP_679374.1|  hypothetical protein CHU_2783...    82   4e-14
 gi|34499477|ref|NP_903692.1|  hypothetical protein CV_4022 [...    81   1e-13


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MKQILCTLDYELYGNGTGDVFEHIIKPTEELLAIARRHGIKYTIFFEVVE
FWYLKREWERGNKMGYTEDPISAMEQQLREAYLQGHDVQLHLHPQWIGAV
HQDGQWRLDLSNWCLGRYQGKGEYSLLSLLKRGKETIEEIIRPVDPHYSC
IALRAGGYNAQPSEEIVRAMRQVGLKVDSSIYPGGFETGALSNYDYSSVA
PDLGHWYVEDRLEYSAHGATDILELPIVAFPIRRLQKYLSLDRIKALFQN
RKSAADTYSAKTANKGGIWGKISYFVELEWQTWDFCLFSKNLHRRFLKRV
ESQRGRKEFVLVGHPKSFVSGESFNYLIGQLKSSYQFLSMTELYDQRLKI
GTKKGVKDTHKPETPAPEGPSPEGPEAGL

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAGCAGATACTATGCACACTGGACTATGAGCTGTATGGCAATGGTAC
AGGTGATGTCTTCGAACATATCATCAAGCCAACCGAAGAGCTACTGGCTA
TAGCTCGGCGACACGGTATTAAGTACACGATTTTCTTTGAGGTGGTGGAG
TTTTGGTACCTCAAAAGGGAGTGGGAGCGAGGAAATAAAATGGGATATAC
AGAGGATCCTATCTCCGCCATGGAGCAACAACTTCGAGAGGCTTATTTGC
AGGGGCATGATGTGCAGTTGCATCTGCATCCGCAGTGGATTGGTGCTGTG
CATCAAGATGGTCAATGGAGACTCGATCTCTCAAATTGGTGTCTTGGTCG
CTATCAAGGTAAGGGGGAATACTCTTTGCTAAGTCTACTCAAGCGAGGTA
AAGAAACGATAGAGGAGATTATTCGCCCTGTCGATCCGCACTACAGCTGT
ATTGCTCTACGGGCAGGTGGATATAATGCTCAGCCGTCCGAGGAGATTGT
CCGAGCGATGCGACAAGTCGGTCTCAAAGTAGATAGCTCTATTTACCCAG
GAGGCTTTGAGACGGGTGCGCTATCCAATTACGATTACAGCTCCGTAGCT
CCCGATTTAGGACATTGGTATGTGGAGGATCGGCTCGAATACTCGGCTCA
TGGAGCAACAGACATTCTGGAGTTACCCATTGTCGCTTTCCCAATTCGTC
GCTTGCAGAAGTATCTGTCATTGGATCGGATTAAGGCACTCTTCCAAAAT
CGTAAGTCCGCGGCAGATACTTATTCCGCCAAAACGGCCAACAAAGGGGG
GATTTGGGGCAAGATAAGTTACTTTGTAGAGCTTGAATGGCAAACATGGG
ATTTCTGCCTATTTTCCAAAAATCTGCATCGTCGATTCTTGAAACGTGTT
GAGAGCCAACGGGGGCGCAAGGAGTTTGTTCTGGTTGGCCACCCGAAGAG
CTTCGTCTCCGGGGAGAGTTTTAATTATCTTATCGGGCAACTTAAAAGCA
GCTATCAGTTCTTGAGCATGACAGAGTTGTATGATCAGAGGCTAAAGATA
GGCACAAAGAAAGGCGTCAAGGATACTCATAAGCCCGAAACACCTGCCCC
AGAAGGACCATCTCCAGAGGGACCTGAAGCTGGTTTG

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