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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0089 IGR0091 IGR0087 IGR0090 IGR0085 IGR0088 IGR0086 cysE, - PG0100.1 wecG, - PG0104 PG0098 PG0099 PG0096 PG0103 PG0100 weeA, - PG0105 capK, - PG0097 PG0102 cysE, - PG0100.1 wecG, - PG0104 PG0098 PG0099 PG0096 PG0103 PG0100 weeA, - PG0105 capK, - PG0097 PG0102 Type: tandem, Name: tan29 - 237 cysE, - PG0100.1 wecG, - PG0104 PG0098 PG0099 PG0096 PG0103 PG0100 weeA, - PG0105 capK, - PG0097 PG0102 PG0101 PG0101


LANL Gene ID: PG0100.1

GenBank Locus Tag: PG0115

DNA Molecule Name:
1  

Genomic Island ID:
2

GenBank ID:
34539980

 Gene Name:
cysE  

 Definition:
serine-O-acetyltransferase

 Cellular Location:
Cytoplasm, Periplasm, Inner membrane [Evidence]

 Gene Start:
138178

Gene Stop:
138612

Gene Length:
435

Molecular Weight*:
15493

pI*:
10.50

Net Charge*:
8.56

EC:
2.3.1.30  

 Functional Class:
Amino acid biosynthesis; Serine family  

 Gene Ontology:
Molecular function
  GO:0008415    acyltransferase activity


 Pathway: pathway table
Cysteine metabolism
Sulfur metabolism

 Comment:
TIGR ID: PG0115

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous weak hits in gapped BLAST to serine-O-acetyltransferase sequences, e.g., residues 5-138 are 47% similar to the enzyme from V.cholerae (gb|AAF94085.1|). Residues 8-142 are 36% similar to the enzyme from Spinacia oleracea (dbj|BAA13634.1).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539980|ref|NP_904459.1|  hexapeptide transferase family...   254   1e-66
 gi|63107063|emb|CAI94410.1|  hypothetical protein [Porphyrom...   236   4e-61
 gi|110802091|ref|YP_697786.1|  Bacterial transferase hexapep...   127   1e-28
 gi|18104611|gb|AAL59616.1|AF457646_1  serine acetyltransfera...   119   4e-26
 gi|52140283|ref|YP_086547.1|  serine O-acetyltransferase (se...   118   1e-25
 gi|156860512|gb|EDO53943.1|  hypothetical protein BACUNI_025...   116   3e-25
 gi|154491606|ref|ZP_02031232.1|  hypothetical protein PARMER...   114   2e-24
 gi|15640939|ref|NP_230570.1|  serine acetyltransferase-relat...   111   2e-23
 gi|49478936|ref|YP_039257.1|  serine acetyltransferase [Baci...   110   3e-23
 gi|154491605|ref|ZP_02031231.1|  hypothetical protein PARMER...   108   7e-23


InterPro Summary:  InterProScan

InterPro
IPR001451
Repeat
Bacterial transferase hexapeptide repeat
PF00132 [35-52]T 82000.04068084649 PF00132 Hexapep[62-79]T 300.00006799286905 PF00132 Hexapep[87-104]T 43999.996743974196 PF00132 Hexapep[105-122]T 2100.0003726265404 PF00132 Hexapep Hexapep
InterPro
IPR011004
Domain
Trimeric LpxA-like
SSF51161 [3-138]T 8.6E-30 SSF51161 Trimer_LpxA_like Trimer_LpxA_like
noIPR
unintegrated
unintegrated
G3DSA:2.160.10.10 [37-138]T 5.799996538547799E-20 G3DSA:2.160.10.10 G3DSA:2.160.10.10 G3DSA:2.160.10.10
PTHR23416 [90-142]T 3.00000067992869E-5 PTHR23416 PTHR23416 PTHR23416
PTHR23416:SF7 [90-142]T 3.00000067992869E-5 PTHR23416:SF7 PTHR23416:SF7 PTHR23416:SF7


COGS Summary:  COGS Search
BeTs to 6 clades of COG1045
COG name: Serine acetyltransferase
Functional Class: E
The phylogenetic pattern of COG1045 is ------vcebrhuj-------
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB001451 (Bacterial transferase hexapeptide repeat) with a combined E-value of 3.9e-07.
    IPB001451A    59-78
    IPB001451B    114-124
    IPB001451A    71-90
    IPB001451A    108-127
    IPB001451A    96-115
    IPB001451B    65-75


 ProDom Summary:  Protein Domain Search
Residues 3-138 are 30% similar to a (TRANSFERASE ACYLTRANSFERASE PROTEIN REPEAT BIOSYNTHESIS) protein domain (PD000343 which is seen in O86162_SYNP8.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
18  
34
non-globular  
33  
145

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MLNAIYFYRLSHWLYRHHIPILPKLITLLIFLIYNSKIPPQAKIGKGSKF
GYGGISVVVHHDSVIGENCSIGHVVTIGGGNSKYPGVPVIGNNVQISRGS
VVFGGITIGNNVVIGANTVVNFPVPDNAVVVGNPGRIVHIKESTC

Gene Nucleotide Sequence:  Sequence Viewer
ATGCTTAATGCAATTTATTTTTACCGATTGTCTCATTGGCTTTATCGTCA
TCATATCCCGATATTGCCAAAGTTAATCACATTGCTCATCTTCCTCATTT
ATAATAGCAAGATACCTCCTCAAGCTAAGATAGGCAAAGGATCTAAGTTC
GGTTATGGAGGGATAAGTGTTGTGGTACATCATGACTCGGTGATAGGAGA
AAATTGTAGTATTGGTCACGTTGTTACTATAGGAGGAGGTAATTCGAAGT
ATCCAGGAGTCCCTGTTATAGGAAATAATGTCCAGATTAGCCGAGGAAGT
GTGGTTTTTGGCGGGATAACCATTGGTAATAACGTTGTTATAGGAGCCAA
TACAGTAGTTAATTTTCCTGTCCCAGACAATGCTGTTGTTGTTGGCAATC
CTGGTCGTATTGTGCATATTAAGGAAAGTACATGT

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