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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0089 IGR0091 IGR0087 IGR0090 IGR0088 IGR0086 cysE, - PG0100.1 wecG, - PG0104 PG0098 PG0099 PG0103 PG0100 weeA, - PG0105 capK, - PG0097 PG0102 cysE, - PG0100.1 wecG, - PG0104 PG0098 PG0099 PG0103 PG0100 weeA, - PG0105 capK, - PG0097 PG0102 Type: tandem, Name: tan29 - 237 cysE, - PG0100.1 wecG, - PG0104 PG0098 PG0099 PG0103 PG0100 weeA, - PG0105 capK, - PG0097 PG0102 PG0101 PG0101


LANL Gene ID: PG0101

GenBank Locus Tag: PG0116

DNA Molecule Name:
1  

Genomic Island ID:
2

GenBank ID:
34539981

 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
138609

Gene Stop:
139829

Gene Length:
1221

Molecular Weight*:
47094

pI*:
7.10

Net Charge*:
0.47

EC:
 

 Functional Class:
Unknown; Conserved hypothetical  

 Gene Ontology:

Pathway: pathway table

 Comment:
TIGR ID: PG0116

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
One significant hit in gapped BLAST to a hypothetical protein from V.cholerae (gb|AAF94088.1). Residues 15-392 are 38% similar to this protein..

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539981|ref|NP_904460.1|  hypothetical protein PG0116 [P...   838   0.0  
 gi|63107064|emb|CAI94411.1|  hypothetical protein [Porphyrom...   752   0.0  
 gi|63107069|emb|CAI94415.1|  hypothetical protein [Porphyrom...   743   0.0  
 gi|150006715|ref|YP_001301458.1|  hypothetical protein BDI_0...   635   e-180
 gi|150003272|ref|YP_001298016.1|  hypothetical protein BVU_0...   622   e-176
 gi|118581264|ref|YP_902514.1|  hypothetical protein Ppro_285...   271   4e-71
 gi|145619208|ref|ZP_01775260.1|  conserved hypothetical prot...   257   9e-67
 gi|94969616|ref|YP_591664.1|  hypothetical protein Acid345_2...   239   3e-61
 gi|15640942|ref|NP_230573.1|  hypothetical protein VC0926 [V...   222   3e-56
 gi|153213842|ref|ZP_01949048.1|  hypothetical protein A55_10...   222   4e-56


InterPro Summary:  InterProScan

InterPro
IPR008928
Domain
Six-hairpin glycosidase-like
SSF48208 [28-314]T 3.5E-18 SSF48208 Glyco_trans_6hp Glyco_trans_6hp


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MLASFLKLKTYCEQEGFKGWDPYDGLNSKVFRALPLLKQSALCRLIVIQG
FKRSPINLRRLALVPKEYNAKGIGLFLQGYCNLYRLVERNPQLTKELGSR
EELLEQVKKLADLLLELRSPGDYSGACWGYNFDWQARRLFLFPKYTPTVV
ATNFCATALMEAYEVTRQQEYLDVALSAAQFVIKDLHRTAYRDGFLFSYS
PLDGNDTVFNASLLGARLLSYCYHYTKDEAYRTLARQTISACCAAQAEDG
SWVYGMLPVQSWIDSFHTGYNLDALIAYQELTGDISFAENIERGLSYYLE
HFFEADGMPKYYHDRTYPIDIHCPGQLFVSLARLHRYDEHRELVDRVMAW
TISSMQDKKGYFYYQMKPGLSSKIPYMRWSNAFMFCAMSYYLINYKEISG
GDFSNDQ

Gene Nucleotide Sequence:  Sequence Viewer
ATGTTAGCATCATTCCTCAAACTTAAAACCTATTGTGAACAAGAAGGCTT
CAAAGGTTGGGATCCGTACGATGGATTGAACTCCAAGGTCTTTCGAGCCT
TACCACTGCTCAAGCAATCAGCACTGTGCCGTCTGATCGTTATTCAGGGA
TTTAAACGTAGCCCAATCAATCTGCGACGTCTCGCCTTAGTACCCAAGGA
GTATAATGCTAAGGGAATTGGCCTTTTTCTCCAAGGTTATTGCAATCTCT
ATCGTTTAGTAGAGCGTAACCCTCAGCTAACTAAGGAACTTGGTTCTCGG
GAGGAGCTTTTGGAACAGGTCAAGAAGCTCGCCGATTTGCTTCTGGAGCT
TCGTTCTCCTGGTGACTATAGTGGGGCTTGCTGGGGGTACAATTTTGATT
GGCAAGCGCGCAGACTTTTCCTTTTCCCTAAATATACGCCGACGGTTGTG
GCTACGAATTTCTGCGCTACGGCTCTGATGGAGGCGTATGAGGTTACACG
CCAACAGGAGTATCTTGATGTTGCTCTCTCGGCGGCTCAATTTGTGATTA
AGGATCTACATCGTACTGCTTATAGAGATGGCTTCCTGTTTTCGTATAGC
CCCTTGGATGGCAACGATACGGTCTTTAATGCTTCTCTGCTTGGAGCGCG
TCTCTTGAGCTATTGCTACCATTATACCAAAGACGAAGCGTATCGCACGC
TTGCGCGCCAAACGATCTCAGCTTGCTGTGCTGCACAAGCCGAAGATGGT
TCGTGGGTCTATGGGATGCTACCCGTGCAGTCATGGATTGATAGCTTCCA
TACCGGCTACAATTTGGATGCACTGATTGCCTATCAAGAGCTAACGGGGG
ACATTTCCTTTGCCGAGAATATAGAGCGTGGGTTGTCGTATTACTTAGAG
CATTTCTTCGAGGCAGATGGTATGCCCAAGTATTATCACGATCGTACTTA
TCCAATCGACATTCATTGTCCTGGTCAGCTCTTCGTGTCGCTAGCTAGAC
TTCATCGCTATGACGAACATCGTGAATTGGTGGATCGGGTTATGGCTTGG
ACTATTAGCAGTATGCAGGATAAGAAGGGCTATTTTTACTATCAAATGAA
GCCTGGCCTTAGCTCTAAGATTCCCTATATGAGGTGGAGCAATGCCTTTA
TGTTTTGTGCAATGTCTTATTATTTAATCAACTATAAAGAAATATCTGGT
GGAGACTTCTCGAACGACCAA

Los Alamos National Laboratory • Est 1943

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