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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0089 IGR0091 IGR0087 IGR0090 IGR0088 IGR0093 IGR0092 PG0106 cysE, - PG0100.1 PG0107 wecG, - PG0104 PG0098 PG0099 PG0103 PG0100 weeA, - PG0105 PG0102 PG0106 cysE, - PG0100.1 PG0107 wecG, - PG0104 PG0098 PG0099 PG0103 PG0100 weeA, - PG0105 PG0102 cysE, - PG0100.1 PG0107 wecG, - PG0104 PG0098 PG0099 PG0103 PG0100 weeA, - PG0105 PG0102 PG0101 PG0101 PG0106


LANL Gene ID: PG0102

GenBank Locus Tag: PG0117

DNA Molecule Name:
1  

Genomic Island ID:
2

GenBank ID:
34539982

 Gene Name:


 Definition:
conserved hypothetical protein (possible flippase)

 Cellular Location:
Inner membrane, Cytoplasm [Evidence]

 Gene Start:
139807

Gene Stop:
141342

Gene Length:
1536

Molecular Weight*:
57689

pI*:
10.10

Net Charge*:
9.63

EC:
 

 Functional Class:
Unknown; Conserved hypothetical  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.
Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.
J Bacteriol. 2004 Aug;186(16):5473-9.
PMID: 15292149

 Comment:
TIGR ID: PG0117. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
A few hits in gapped BLAST. Residues 1-456 are 37% similar to a predicted flippase from B. fragilis (AF048749). Residues 5-398 are 25% similar to a hypothetical protein from Salmonella choleraesuis (M84642).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539982|ref|NP_904461.1|  polysaccharide transport prote...   789   0.0  
 gi|34540672|ref|NP_905151.1|  polysaccharide transport prote...   392   e-107
 gi|29346764|ref|NP_810267.1|  putative flippase [Bacteroides...   353   1e-95
 gi|150008219|ref|YP_001302962.1|  putative flippase [Parabac...   332   3e-89
 gi|60680557|ref|YP_210701.1|  putative O-antigen flippase [B...   329   2e-88
 gi|156860929|gb|EDO54360.1|  hypothetical protein BACUNI_018...   268   5e-70
 gi|154492984|ref|ZP_02032610.1|  hypothetical protein PARMER...   249   3e-64
 gi|68054367|ref|ZP_00538531.1|  repeat unit transporter [Exi...   164   1e-38
 gi|28377979|ref|NP_784871.1|  repeat unit transporter [Lacto...   149   6e-34
 gi|18309471|ref|NP_561405.1|  probable flippase [Clostridium...   148   9e-34


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
signalp [1-35]? NA signalp signal-peptide signal-peptide
tmhmm [15-35]? NA tmhmm transmembrane_regions[54-72]? NA tmhmm transmembrane_regions[93-113]? NA tmhmm transmembrane_regions[123-145]? NA tmhmm transmembrane_regions[160-182]? NA tmhmm transmembrane_regions[188-208]? NA tmhmm transmembrane_regions[246-268]? NA tmhmm transmembrane_regions[274-294]? NA tmhmm transmembrane_regions[309-329]? NA tmhmm transmembrane_regions[343-361]? NA tmhmm transmembrane_regions[371-393]? NA tmhmm transmembrane_regions[399-419]? NA tmhmm transmembrane_regions[440-465]? NA tmhmm transmembrane_regions[471-493]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 15-303 are 26% similar to a (PROTEIN PUTATIVE O-ANTIGEN TRANSPORTER) protein domain (PD043236 which is seen in Q01431_BBBBB.


Paralogs:  Local Blast Search
Residues 4-512 share 47% identity with PG0813, conserved hypothetical protein.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
39
transmembrane  
17  
34
transmembrane  
92  
114
transmembrane  
96  
112
transmembrane  
122  
140
transmembrane  
127  
143
transmembrane  
160  
176
transmembrane  
166  
187
transmembrane  
187  
203
transmembrane  
192  
209
transmembrane  
251  
267
transmembrane  
256  
273
transmembrane  
273  
289
transmembrane  
278  
295
transmembrane  
313  
329
transmembrane  
319  
337
transmembrane  
343  
359
transmembrane  
345  
362
transmembrane  
398  
418
transmembrane  
401  
417
transmembrane  
441  
458
transmembrane  
441  
457
transmembrane  
477  
494
transmembrane  
478  
494

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
VETSRTTNSAKNSIISLLFYGLLIILTFFSRRVFIDALGAELLGLNTTIT
NLLGLLNLSEMGIATAISFTLYKPIAENDRETIREIVSVQGWVYFIVASI
VMLGGIVMIFFIPQIFADTALPLSYAYSTFIVFLFSSLLGYFFNYKQIMH
SASQKEYKNVLIVKLLLAIKIIAQIIALRFLSLGYQSWLILEVIFSIMTT
LLISYSIKREYSWLRVSIFEGRRLTAKYAIIFTKVKQLFFHKIGGFVLSQ
ASPLVVFAFTSLSLVAIYGNYMLVFSGITTLIAASFGGIMPVIGNMIVEN
DKEKERKVFGEYMVLKMLLGASFTHCLFVGGKVFMTLWMGEDFLLPDFSF
YLLLAIGYINFTRPYDTFLVPYGLVEDIWAPIVEAGLNLGLSMLLGYYFS
LPGILIGILISLIVIVLGWKGCFLATKGLQMAPISLIGRYLGYTVLFIGL
SFALVTLATQLSWIFTLRQTFVDWAIEMLLQFLSFLLFALLVLVGFDSNT
KNLIRRIFSYLR

Gene Nucleotide Sequence:  Sequence Viewer
GTGGAGACTTCTCGAACGACCAATAGTGCAAAAAATAGTATAATCTCACT
TTTGTTTTATGGGCTTCTTATTATTTTAACTTTCTTCTCACGTAGAGTTT
TTATTGATGCCTTAGGTGCCGAACTCCTAGGACTCAATACTACAATTACT
AATCTCTTAGGCCTTCTCAACTTGTCTGAGATGGGGATAGCTACGGCTAT
ATCATTTACATTATATAAGCCGATTGCAGAGAATGATCGAGAGACAATAC
GAGAGATTGTTTCCGTTCAGGGGTGGGTTTATTTTATTGTTGCCTCTATT
GTTATGCTTGGGGGCATTGTCATGATATTTTTTATCCCCCAGATCTTTGC
AGATACTGCATTGCCATTGTCGTATGCTTATTCTACTTTTATCGTTTTTC
TATTTTCTTCTTTGCTCGGATACTTCTTTAACTATAAACAAATCATGCAT
TCTGCCTCGCAGAAGGAGTATAAGAATGTATTGATTGTTAAGCTACTTCT
TGCGATTAAGATAATCGCGCAGATAATAGCTCTGCGCTTTTTATCTTTAG
GCTATCAAAGCTGGTTGATTTTAGAGGTGATTTTTTCCATCATGACTACA
CTTTTAATTAGTTATAGCATAAAGAGAGAGTACTCATGGCTTCGGGTTTC
AATATTCGAGGGGCGTAGATTAACAGCTAAATATGCAATCATTTTTACCA
AGGTTAAGCAGTTGTTTTTTCATAAAATTGGAGGATTCGTCCTATCTCAG
GCTAGTCCTTTGGTTGTATTTGCATTTACTTCCTTGTCTTTAGTTGCTAT
ATATGGCAATTATATGCTCGTTTTCTCGGGAATTACAACGCTTATTGCTG
CCTCTTTTGGAGGGATTATGCCTGTAATTGGTAATATGATCGTAGAGAAT
GATAAAGAGAAAGAGAGAAAAGTGTTTGGAGAATACATGGTATTAAAGAT
GCTCTTAGGCGCTTCTTTTACTCATTGTTTATTTGTTGGAGGAAAGGTGT
TCATGACACTTTGGATGGGCGAAGATTTTTTGCTCCCCGACTTCTCTTTT
TACCTCTTACTTGCTATTGGTTATATTAACTTTACCCGTCCCTATGATAC
TTTTTTAGTCCCATACGGACTCGTAGAAGATATATGGGCTCCTATCGTAG
AAGCTGGACTAAATTTAGGATTATCTATGCTATTGGGTTATTATTTCTCT
CTACCTGGAATTTTAATTGGTATATTGATTAGTCTCATAGTGATTGTTTT
AGGCTGGAAAGGATGTTTCTTGGCGACCAAAGGGCTACAGATGGCTCCAA
TATCTTTGATTGGTCGTTATTTAGGCTATACTGTTTTGTTTATTGGTCTA
TCCTTTGCGTTGGTTACTTTAGCTACCCAATTATCTTGGATATTTACCTT
GAGACAGACTTTCGTAGATTGGGCTATCGAGATGCTTCTACAGTTTTTGT
CTTTTTTGCTATTTGCGCTCCTAGTGTTAGTAGGATTTGATTCCAATACA
AAGAACTTAATACGAAGAATATTCAGTTATTTAAGA

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