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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0095 IGR0089 IGR0091 IGR0090 IGR0094 IGR0088 IGR0093 IGR0092 PG0109 PG0108 PG0106 cysE, - PG0100.1 PG0107 wecG, - PG0104 PG0099 PG0103 PG0100 weeA, - PG0105 PG0102 PG0109 PG0108 PG0106 cysE, - PG0100.1 PG0107 wecG, - PG0104 PG0099 PG0103 PG0100 weeA, - PG0105 PG0102 PG0108 PG0109 PG0106 cysE, - PG0100.1 PG0107 wecG, - PG0104 PG0103 PG0100 weeA, - PG0105 PG0102 PG0101 PG0101 PG0099


LANL Gene ID: PG0103

GenBank Locus Tag: PG0118

DNA Molecule Name:
1  

Genomic Island ID:
2

GenBank ID:
34539983

 Gene Name:


 Definition:
glycosyltransferase

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
141349

Gene Stop:
142401

Gene Length:
1053

Molecular Weight*:
41057

pI*:
9.10

Net Charge*:
6.98

EC:
 

 Functional Class:
Uncategorized  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.
Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.
J Bacteriol. 2004 Aug;186(16):5473-9.
PMID: 15292149

 Comment:
TIGR ID: PG0118. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous hits in gapped BLAST to glycosyltransferases, e.g. residues 15-227 are 36% similar to the N-acetylglucosaminyltransferase from Streptococcus agalactiae (dbjBAA33749.1) and to the EpsI protein from Streptococcus thermophilus (U40830).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539983|ref|NP_904462.1|  glycosyl transferase, group 2 ...   727   0.0  
 gi|63107065|emb|CAI94412.1|  hypothetical protein [Porphyrom...   395   e-108
 gi|154504892|ref|ZP_02041630.1|  hypothetical protein RUMGNA...   148   5e-34
 gi|24637448|gb|AAN63722.1|AF454497_11  Eps6J [Streptococcus ...   135   3e-30
 gi|24637482|gb|AAN63753.1|AF454499_10  Eps9I [Streptococcus ...   133   2e-29
 gi|24637447|gb|AAN63721.1|AF454497_10  Eps6I [Streptococcus ...   132   3e-29
 gi|29376678|ref|NP_815832.1|  glycosyl transferase, group 2 ...   132   4e-29
 gi|24637428|gb|AAN63704.1|AF454496_9  Eps5I [Streptococcus t...   130   1e-28
 gi|68643258|emb|CAI33534.1|  putative glycosyl transferase [...   130   2e-28
 gi|13377455|gb|AAK20714.1|AF316642_8  WciV [Streptococcus pn...   127   8e-28


InterPro Summary:  InterProScan

InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535 [17-182]T 1.49999648196318E-42 PF00535 Glycos_transf_2 Glycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10 [14-234]T 2.1000026783402503E-49 G3DSA:3.90.550.10 G3DSA:3.90.550.10 G3DSA:3.90.550.10
PTHR22916 [22-351]T 9.399989427038199E-32 PTHR22916 PTHR22916 PTHR22916
SSF53448 [14-259]T 1.8000000000000001E-50 SSF53448 SSF53448 SSF53448


COGS Summary:  COGS Search
BeTs to 14 clades of COG0463
COG name: Glycosyltransferases involved in cell wall biogenesis
Functional Class: M
The phylogenetic pattern of COG0463 is AMTKYQVCEBRHujGPo---X
Number of proteins in this genome belonging to this COG is 8
Blocks Summary:  Blocks Search
***** PF00535 (Glycosyl transferases) with a combined E-value of 5.5e-12.
    PF00535A    45-55
    PF00535B    94-103


 ProDom Summary:  Protein Domain Search
Residues 15-86 are 59% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE PUTATIVE) protein domain (PD000196 which is seen in O87182_STRAG.


Paralogs:  Local Blast Search
PG0103 shows similarity to four glycosyl transferases: residues 12-143 are 32% similar to PG1637, residues 16-124 are 28% similar to PG0285, residues 14-111 are 32% similar to PG0676, and residues 13-152 are 29% similar to PG0309.

Pfam Summary:  Pfam Search
Residues 17 to 182 (E-value = 1.2e-43) place PG0103 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable signal  
1  
58
transmembrane  
156  
172
transmembrane  
202  
219
transmembrane  
325  
342

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MIIPMNNKHPLPTPLVSIIIPVYNVEKYLYRCVKSILSQDYYDYEIILVD
DGSTDGSGMICDELTEQHGHISVIHKPNGGQGSARNAGLNHAKGKYIWFI
DSDDYISPHSLSVIMSQITQGDFDALFFPYIKSNGNILIGEAVGKYHAGV
YRGQQLLLEGLVNMSMCTIVSLRSRWIDNRIFFREDIHFEDFEINPRVLK
FLERAIFLDSNIIPYIYYTRLGSTMNQLDPQKRMRQTEDFLRIEKSWKEW
FNLDSPEPNSYDMLMLRTGTNMLHRNLLNFVRNSNFSISTKLKLYAQYRK
KGVFSWFYNGYRRDPYVGCTSVRVFWNTIGRSYILFSLFSIVEEIWKKIR
K

Gene Nucleotide Sequence:  Sequence Viewer
ATGATTATCCCTATGAACAACAAGCATCCTTTACCCACTCCACTAGTATC
TATTATTATTCCGGTTTATAATGTAGAGAAGTATCTATATAGGTGTGTAA
AAAGTATTCTGTCGCAAGATTATTATGACTATGAGATAATATTAGTAGAT
GATGGGTCTACTGATGGTAGCGGAATGATTTGCGATGAATTGACAGAACA
GCATGGCCACATAAGCGTTATTCATAAGCCTAACGGAGGCCAGGGTAGTG
CTAGAAATGCAGGATTAAATCATGCTAAAGGGAAATATATTTGGTTTATA
GATTCCGATGATTATATCTCGCCCCATTCTCTTTCAGTTATTATGAGCCA
AATTACGCAAGGGGATTTTGATGCGTTATTTTTCCCTTATATAAAGAGTA
ATGGTAATATCTTGATCGGAGAGGCTGTTGGGAAATACCATGCTGGGGTA
TACAGAGGCCAACAACTTTTGCTTGAAGGATTGGTCAATATGTCGATGTG
TACGATTGTAAGTCTAAGATCTCGATGGATTGACAATCGAATATTCTTTA
GGGAAGATATTCATTTCGAAGACTTTGAGATTAACCCAAGAGTATTAAAA
TTTCTCGAGAGAGCCATTTTTCTAGATTCCAATATAATACCTTATATCTA
TTATACTAGATTGGGTAGTACGATGAACCAATTGGATCCCCAAAAAAGAA
TGAGGCAAACAGAAGATTTCCTCCGTATCGAAAAGTCTTGGAAGGAATGG
TTCAACCTAGATTCTCCAGAGCCTAATAGCTATGATATGCTCATGCTAAG
AACAGGGACCAATATGCTCCATCGTAACCTGCTGAACTTTGTAAGAAACT
CAAACTTCTCGATATCTACCAAGCTCAAGCTGTATGCTCAGTACAGAAAA
AAGGGTGTATTTTCCTGGTTTTATAACGGATATAGAAGAGATCCCTATGT
AGGGTGCACTTCTGTGAGAGTCTTTTGGAATACAATAGGACGTTCTTATA
TCTTATTTTCTTTGTTCTCCATTGTGGAAGAGATCTGGAAGAAGATTAGA
AAA

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