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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0095 IGR0089 IGR0091 IGR0090 IGR0094 IGR0088 IGR0093 IGR0092 PG0109 PG0108 PG0110 PG0106 cysE, - PG0100.1 PG0107 wecG, - PG0104 PG0103 PG0100 weeA, - PG0105 PG0102 PG0109 PG0108 PG0110 PG0106 cysE, - PG0100.1 PG0107 wecG, - PG0104 PG0103 PG0100 weeA, - PG0105 PG0102 PG0108 PG0110 PG0109 PG0106 PG0107 wecG, - PG0104 PG0103 PG0100 weeA, - PG0105 PG0102 PG0101 PG0101 cysE, - PG0100.1


LANL Gene ID: PG0104

GenBank Locus Tag: PG0119

DNA Molecule Name:
1  

Genomic Island ID:
2

GenBank ID:
34539984

 Gene Name:
wecG  

 Definition:
UDP-N-acetyl-D-mannosaminuronic acid transferase

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
142440

Gene Stop:
143135

Gene Length:
696

Molecular Weight*:
26525

pI*:
10.10

Net Charge*:
8.35

EC:
2.4.1.-  

 Functional Class:
Cell envelope; Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides  

 Gene Ontology:
Biological process
  GO:0009058    biosynthetic process


 Pathway: pathway table
Fructose and mannose metabolism
Glycerolipid metabolism
Glycoprotein biosynthesis
Peptideglycan biosynthesis
Sphingoglycolipid metabolism

 Comment:
TIGR ID: PG0119

 Proteomic Data: Proteomic Data Search
TIGR Annotationglycosyl transferase, WecB/TagA/CpsF family, GroupC (cell envelope)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0119-0.640.075-0.160.20.360.2-0.160.2
LANLPG01040.640.891.280.30
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Several hits in gapped BLAST to UDP-N-acetyl-D-mannosaminuronic acid transferases, e.g., residues 31-224 are 46% similar to the enzyme from S.typhimurium (gb|AAF33458.1). Residues 2-228 are 34% similar to the enzyme from S.pneumoniae (AF094575).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539984|ref|NP_904463.1|  glycosyl transferase, WecB/Tag...   473   e-132
 gi|63107070|emb|CAI94416.1|  hypothetical protein [Porphyrom...   464   e-129
 gi|63107066|emb|CAI94413.1|  hypothetical protein [Porphyrom...   461   e-128
 gi|150003271|ref|YP_001298015.1|  glycosyltransferase family...   314   3e-84
 gi|150006716|ref|YP_001301459.1|  glycosyltransferase family...   311   2e-83
 gi|154491609|ref|ZP_02031235.1|  hypothetical protein PARMER...   308   1e-82
 gi|154494896|ref|ZP_02033901.1|  hypothetical protein PARMER...   307   3e-82
 gi|154148271|ref|YP_001407010.1|  probable UDP-N-acetyl-D-ma...   223   6e-57
 gi|51594535|ref|YP_068726.1|  putative UDP-N-acetyl-D-mannos...   168   2e-40
 gi|62182404|ref|YP_218821.1|  putative UDP-N-acetyl-D-mannos...   168   3e-40


InterPro Summary:  InterProScan

InterPro
IPR004629
Family
Glycosyl transferase WecB/TagA/CpsF
PF03808 [47-217]T 1.1000015067164299E-54 PF03808 Glyco_tran_WecB Glyco_tran_WecB
TIGR00696 [47-223]T 3.0696789288410403E-53 TIGR00696 wecB_tagA_cpsF wecB_tagA_cpsF


COGS Summary:  COGS Search
BeTs to 5 clades of COG1922
COG name: Teichoic acid biosynthesis proteins
Functional Class: M
The phylogenetic pattern of COG1922 is ------vCeb-------l---
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 31-224 are 46% similar to a (TRANSFERASE ACID) protein domain (PD007627 which is seen in WECG_ECOLI.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 47 to 217 (E-value = 1.8e-57) place PG0104 in the Glyco_tran_WecB family which is described as Glycosyl transferase WecB/TagA/CpsF family (PF03808)

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MQQILLGGVEVYPFTSAEELISYVSGHPAILVAINAEKILHATDELKAIY
NRNLGYSDGAGAVLALKKKGHQNACKIAGCELWLKIIERYSREKSFYLVG
GKPEVIEETIQKLRKDFPRINIVGYRDGYLKGNDDEVLIEDIAAKKPDVV
FVAMGSPKQELLMERMQRVHPNAIYQGLGGSFDVYTGRVERAPEWWIRHN
LEFAYRLIKQPSRIKRQIHLVRFLFRVLTNRI

Gene Nucleotide Sequence:  Sequence Viewer
ATGCAGCAGATATTATTAGGGGGAGTGGAGGTATATCCCTTTACTTCAGC
GGAAGAGCTTATCAGCTATGTATCAGGACATCCTGCCATTTTGGTGGCAA
TCAATGCAGAGAAAATCCTGCATGCTACAGACGAACTAAAAGCCATTTAT
AATCGCAATCTCGGCTATTCGGACGGAGCAGGTGCTGTGCTTGCTCTCAA
AAAGAAGGGCCATCAGAATGCTTGTAAAATAGCCGGTTGCGAGCTTTGGC
TTAAGATTATCGAGCGATACAGCCGAGAGAAAAGTTTTTACCTCGTGGGA
GGCAAGCCGGAAGTTATTGAAGAGACAATTCAAAAGCTTAGAAAGGATTT
CCCCCGGATAAATATAGTAGGATACCGAGATGGCTATCTTAAGGGTAACG
ATGATGAAGTCCTGATTGAAGATATTGCTGCTAAAAAGCCCGATGTGGTC
TTTGTGGCCATGGGGTCTCCCAAGCAAGAACTGCTGATGGAGCGTATGCA
AAGGGTACACCCTAACGCTATCTATCAAGGATTGGGCGGTAGTTTCGATG
TATATACGGGGCGCGTAGAGCGTGCTCCGGAGTGGTGGATTCGCCACAAT
CTGGAGTTTGCCTATCGCCTTATCAAGCAGCCCAGTCGCATCAAGCGTCA
GATACATTTAGTACGATTCCTGTTTAGAGTATTAACCAATAGAATA

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