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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0095 IGR0089 IGR0091 IGR0097 IGR0090 IGR0094 IGR0093 IGR0092 IGR0096 PG0109 PG0108 PG0110 PG0106 PG0107 wecG, - PG0104 PG0113 hemH,hemZ, - PG0112 PG0103 weeA, - PG0105 PG0102 PG0109 PG0108 PG0110 PG0106 PG0107 wecG, - PG0104 PG0113 hemH,hemZ, - PG0112 PG0103 weeA, - PG0105 PG0102 PG0108 PG0110 PG0111 PG0111 PG0109 PG0106 PG0107 wecG, - PG0104 hemH,hemZ, - PG0112 PG0103 weeA, - PG0105 PG0102 PG0101 PG0101 PG0113


LANL Gene ID: PG0106

GenBank Locus Tag: PG0121

DNA Molecule Name:
1  

GenBank ID:
34539986

Gene Name:


Definition:
DNA-binding protein (HU-related)

Cellular Location:
Cytoplasm, Periplasm [Evidence]

Gene Start:
144608

Gene Stop:
144871

Gene Length:
264

Molecular Weight*:
9461

pI*:
11.00

Net Charge*:
7.98

EC:
 

Functional Class:
DNA metabolism; Chromosome-associated proteins  

Gene Ontology:
Molecular function
  GO:0003677    DNA binding


Pathway: pathway table

Comment:
TIGR ID: PG0121

Proteomic Data: Proteomic Data Search
TIGR AnnotationDNA-binding protein HU, GroupF (DNA metabolism)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG01211.8401.090.000173.5501.090.00017
LANLPG01063.572.1311.7114.08
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous significant hits to DNA-binding protein in gapped BLAST; e.g. residues 1-86 are 54% similar to dbj|BAA07273.1| DNA binding protein HU of Bacillus stearothermophilus, residues 1-86 are 54% similar to dbj|BAB05028.1| non-specific DNA-binding protein II (HB) (HU) of Bacillus halodurans, residues 1-86 are 51% similar to pir||DNZRH3 DNA-binding protein of Rhizobium leguminosarum.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539986|ref|NP_904465.1|  DNA-binding protein HU [Porphy...   135   7e-31
 gi|154483310|ref|ZP_02025758.1|  hypothetical protein EUBVEN...    90   4e-17
 gi|68552540|ref|ZP_00591928.1|  Histone-like bacterial DNA-b...    89   8e-17
 gi|154491895|ref|ZP_02031521.1|  hypothetical protein PARMER...    89   1e-16
 gi|150003567|ref|YP_001298311.1|  DNA-binding protein HU-bet...    87   3e-16
 gi|78187799|ref|YP_375842.1|  Histone-like DNA-binding prote...    87   4e-16
 gi|150010179|ref|YP_001304922.1|  DNA-binding protein HU-bet...    86   5e-16
 gi|78188340|ref|YP_378678.1|  Histone-like DNA-binding prote...    86   9e-16
 gi|77919284|ref|YP_357099.1|  DNA-binding protein HU-beta, N...    85   1e-15
 gi|145220403|ref|YP_001131112.1|  histone family protein DNA...    84   2e-15


InterPro Summary:  InterProScan

InterPro
IPR000119
Family
Histone-like bacterial DNA-binding protein
PD000945 [9-85]T 0.0 PD000945 Bac_DNAbind Bac_DNAbind
PR01727 [40-55]T 1.9E-13 PR01727 DNABINDINGHU[58-71]T 1.9E-13 PR01727 DNABINDINGHU[74-88]T 1.9E-13 PR01727 DNABINDINGHU DNABINDINGHU
G3DSA:4.10.520.10 [1-85]T 4.0000030086991595E-26 G3DSA:4.10.520.10 Hist_DNA_bd_bac Hist_DNA_bd_bac
PF00216 [1-88]T 1.9999963603453602E-33 PF00216 Bac_DNA_binding Bac_DNA_binding
SM00411 [1-88]T 3.10000000000019E-34 SM00411 BHL BHL
PS00045 [46-65]? 0.0 PS00045 HISTONE_LIKE HISTONE_LIKE
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729 [1-86]T 8.4E-29 SSF47729 IHF_like_DNA_bnd IHF_like_DNA_bnd


COGS Summary:  COGS Search
BeTs to 11 clades of COG0776
COG name: Histone-like DNA-binding protein
Functional Class: L
The phylogenetic pattern of COG0776 is -----QvcEBrHujgpolinX
Number of proteins in this genome belonging to this COG is 3
Blocks Summary:  Blocks Search
***** IPB000119 (Bacterial histone-like DNA-binding protein) with a combined E-value of 5.4e-22.
    IPB000119    39-88


 ProDom Summary:  Protein Domain Search
Residues 2-86 are 54% similar to a (DNA-BINDING DNA PROTEIN CONDENSATION FACTOR INTEGRATION) protein domain (PD000945 which is seen in DBH_BACST.


Paralogs:  Local Blast Search
Residues 1-81 are 32% similar to PG1111, a predicted histone-like DNA binding protein, IHFA, IHFB, or DBH.

Pfam Summary:  Pfam Search
Residues 1 to 88 (E-value = 1.2e-36) place PG0106 in the Bac_DNA_binding family which is described as Bacterial DNA-binding protein (PF00216)

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTF
SVSERAARKGINPKTKKSISIPARKVVRFKPGSTLELK

Gene Nucleotide Sequence:  Sequence Viewer
ATGAACAAGACAGATTTTATTGCAGCTGTAGCTGAAAAGGCCAACCTCAC
AAAGGCTGATGCCCAGAGAGCAGTAAATGCATTTGCAGAAGTTGTAACAG
AACAGATGAATGCCGGAGAGAAAATCGCTCTCATCGGATTCGGTACTTTC
TCAGTGAGCGAGCGTGCTGCTCGCAAAGGCATTAATCCTAAGACGAAAAA
ATCTATTTCTATCCCTGCCCGTAAGGTTGTTCGTTTCAAACCGGGCTCTA
CTTTGGAACTTAAG

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