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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0089 IGR0095 IGR0091 IGR0097 IGR0098 IGR0090 IGR0094 IGR0093 IGR0092 IGR0096 PG0109 PG0108 PG0110 PG0106 PG0107 wecG, - PG0104 PG0113 hemH,hemZ, - PG0112 PG0103 PG0114 weeA, - PG0105 PG0102 PG0109 PG0108 PG0110 PG0106 PG0107 wecG, - PG0104 PG0113 hemH,hemZ, - PG0112 PG0103 PG0114 weeA, - PG0105 PG0102 PG0108 PG0110 PG0111 PG0111 PG0109 PG0106 PG0107 wecG, - PG0104 hemH,hemZ, - PG0112 PG0114 weeA, - PG0105 PG0102 PG0113 PG0103


LANL Gene ID: PG0108

GenBank Locus Tag: PG0124

DNA Molecule Name:
1  

GenBank ID:
34539988

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
146324

Gene Stop:
145707

Gene Length:
618

Molecular Weight*:
22784

pI*:
5.00

Net Charge*:
-4.84

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0124

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Several hits in gapped BLAST to bacterial hypothetical proteins, e.g., residues 5-177 are 42% similar to a hypothetical from N.meningiditis (AL162752) and 34% similar to a hypothetical from C. histolyticum (AB014075).

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539988|ref|NP_904467.1|  hypothetical protein PG0124 [P...   370   e-101
 gi|154492616|ref|ZP_02032242.1|  hypothetical protein PARMER...   194   3e-48
 gi|150007573|ref|YP_001302316.1|  hypothetical protein BDI_0...   191   3e-47
 gi|156108841|gb|EDO10586.1|  hypothetical protein BACOVA_040...   189   6e-47
 gi|156860769|gb|EDO54200.1|  hypothetical protein BACUNI_022...   188   1e-46
 gi|29346560|ref|NP_810063.1|  hypothetical protein BT_1150 [...   184   2e-45
 gi|53713311|ref|YP_099303.1|  hypothetical protein BF2022 [B...   183   5e-45
 gi|153806714|ref|ZP_01959382.1|  hypothetical protein BACCAC...   182   2e-44
 gi|150005553|ref|YP_001300297.1|  hypothetical protein BVU_3...   175   1e-42
 gi|67940151|ref|ZP_00532614.1|  Protein of unknown function ...   171   2e-41


InterPro Summary:  InterProScan

InterPro
IPR001498
Domain
Protein of unknown function UPF0029, N-terminal
PTHR16301 [18-153]T 2.30000061930563E-4 PTHR16301 UPF0029 UPF0029
PF01205 [19-126]T 7.40000780398385E-46 PF01205 UPF0029 UPF0029
InterPro
IPR009022
Domain
Elongation factor G, III and V
SSF54980 [135-189]T 3.7999999999999995E-5 SSF54980 EFG_III_V EFG_III_V
noIPR
unintegrated
unintegrated
G3DSA:3.30.230.30 [5-134]T 5.69999708784002E-41 G3DSA:3.30.230.30 G3DSA:3.30.230.30 G3DSA:3.30.230.30
SSF54211 [2-134]T 2.5000000000000003E-42 SSF54211 SSF54211 SSF54211


COGS Summary:  COGS Search
BeTs to 6 clades of COG1739
COG name: Uncharacterized ACR, YigZ/UPF0029 family
Functional Class:  S
The phylogenetic pattern of COG1739 is ----Y-v-eb-huj--o----
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB001498 (Uncharacterized protein family UPF0029) with a combined E-value of 1e-13.
    IPB001498    82-122


 ProDom Summary:  Protein Domain Search
Residues 20-109 are 44% similar to a (PROTEIN INTERGENIC REGION PROLINE) protein domain (PD006754 which is seen in Q9ZNK1_CLOHI.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 19 to 126 (E-value = 6.6e-49) place PG0108 in the UPF0029 family which is described as Uncharacterized protein family UPF0029 (PF01205)

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
83  
99
transmembrane  
88  
105
non-globular  
113  
155

Top PDB Hits:
-66% similar to PDB:2CVE Crystal structure of a conserved hypothetical protein TT1547 from thermus thermophilus HB8 (E_value = 2.2E_19);
-47% similar to PDB:1VI7 Crystal structure of an hypothetical protein (E_value = 7.2E_18);
-50% similar to PDB:1R5B Crystal structure analysis of sup35 (E_value = 7.2E_18);
-50% similar to PDB:1R5N Crystal Structure Analysis of sup35 complexed with GDP (E_value = 7.2E_18);
-50% similar to PDB:1R5O crystal structure analysis of sup35 complexed with GMPPNP (E_value = 7.2E_18);

Gene Protein Sequence:
MAEDSYLTISAPSEAQYTEKRSRFLAFAYPVKSEEEALSLVADLRRRYFD
ARHVCWAYKLGAKGERTRSNDDGEPSGTAGKPILGQITSLGLTQVFVAVV
RYFGGVKLGTSGLIVAYREAAREALEAADRKEEILYEELTIAFEYPLLGE
VMRLVKDAGASIRSQDFVENCRLTVSLRGNDAAILRDRLSAIYGVALVQD
EDFLNG

Gene Nucleotide Sequence:  Sequence Viewer
ATGGCCGAAGATTCCTACCTCACGATCAGTGCTCCCTCGGAAGCACAGTA
CACGGAGAAACGCAGCCGCTTCCTGGCTTTCGCCTATCCTGTAAAGTCGG
AAGAGGAGGCCCTGTCGCTTGTGGCCGATCTGCGTCGCCGCTACTTCGAT
GCACGCCATGTATGCTGGGCATACAAGCTGGGAGCCAAAGGCGAACGCAC
ACGATCCAATGACGACGGAGAGCCATCGGGGACTGCCGGCAAACCCATCC
TCGGGCAGATCACCTCATTGGGGCTTACGCAGGTATTCGTCGCAGTAGTG
CGCTACTTCGGAGGTGTCAAGCTGGGCACGAGCGGTCTTATCGTTGCTTA
TCGCGAAGCGGCTCGCGAAGCCCTCGAAGCAGCCGACCGGAAGGAAGAGA
TCCTGTATGAAGAACTGACTATCGCCTTCGAATATCCTTTGCTGGGAGAA
GTGATGCGACTGGTGAAAGATGCCGGAGCCTCCATCCGCTCGCAGGATTT
TGTCGAGAATTGCAGGCTTACCGTCAGCCTTCGCGGCAACGATGCCGCCA
TCCTGCGAGATCGCCTCTCAGCCATCTACGGCGTCGCCCTCGTCCAAGAC
GAAGATTTTCTCAACGGT

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