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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0097 IGR0098 IGR0101 IGR0102 IGR0099 IGR0100 gpmA,pgmA, - PG0115 kgsA, - PG0121 PG0117 mgtE, - PG0119 PG0118 PG0116 PG0113 hemH,hemZ, - PG0112 PG0122 PG0114 PG0120 gpmA,pgmA, - PG0115 kgsA, - PG0121 PG0117 mgtE, - PG0119 PG0118 PG0116 PG0113 hemH,hemZ, - PG0112 PG0122 PG0114 PG0120 gpmA,pgmA, - PG0115 kgsA, - PG0121 PG0117 mgtE, - PG0119 PG0118 PG0116 PG0113 hemH,hemZ, - PG0112 PG0122 PG0114 PG0120


LANL Gene ID: PG0117

GenBank Locus Tag:

DNA Molecule Name:
1  

Genomic Island ID:
3

GenBank ID:


 Gene Name:


 Definition:
hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
154352

Gene Stop:
153045

Gene Length:
1308

Molecular Weight*:
50599

pI*:
8.20

Net Charge*:
6.06

EC:
 

 Functional Class:
Unknown; Hypothetical  

 Gene Ontology:

Pathway: pathway table

 Comment:
NO TIGR ID corresponds to this gene.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No hit found in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|146299994|ref|YP_001194585.1|  CDP-glycerol:poly(glycerop...   248   6e-64
 gi|29348288|ref|NP_811791.1|  hypothetical protein BT_2879 [...   202   3e-50
 gi|118753899|ref|ZP_01601698.1|  CDP-glycerol:poly(glyceroph...   166   2e-39
 gi|91226578|ref|ZP_01261302.1|  hypothetical protein V12G01_...   165   6e-39
 gi|32265578|ref|NP_859610.1|  hypothetical protein HH0079 [H...    89   8e-16
 gi|156719765|ref|ZP_02061379.1|  hypothetical protein HY04AA...    87   2e-15
 gi|56551248|ref|YP_162087.1|  hypothetical protein ZMO0352 [...    79   5e-13
 gi|84686178|ref|ZP_01014073.1|  hypothetical protein RB2654_...    66   5e-09


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
23  
53

Top PDB Hits:
-48% similar to PDB:1Z63 Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA (E_value = );
-48% similar to PDB:1Z6A Sulfolobus solfataricus SWI2/SNF2 ATPase core domain (E_value = );

Gene Protein Sequence:
MSLLRRFSSRLYALAPKRMQYIITEGKRRLRRLTVEPRLICEAQQRNDEL
KKKLCGKETINVVFLAVYDSMWKYDALFAAMLRHPRVRPVLIVCPADNLP
AGERGELLQKTLAHFQAKGFDPQPACRDNGEVRDIRAEFAPDYIFYTTPY
DIQLPPPLRQRTFPDILTCYSLYGYPLEEYPDWYDLLFHNLLGYYFLVSE
EDLRIYSRLSRVRGCNGVVSGAPLFDAFSSEMRSRTEKNNEELPLVIIAP
HHSIEPWGYSLSNFLDYADTFLRLARKYEGRLRFAFKPHPILKTKLYAPE
SWGRERTDQYYREWADMPHAELAEGAYVDLFCRSSALVHDCSAFTVEYQI
VGRPALFMRKNGRLPHGLNRAAQEAFALHDMADSAEDIDSFLQKIAERRP
DPVADRRRVFIRDYLLPPRGATASEVIIDTLLTSRS

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGCCTACTACGTCGATTCTCTTCTCGCCTTTATGCCCTCGCTCCCAA
ACGGATGCAGTATATCATCACAGAGGGAAAACGACGCCTGCGCCGCCTAA
CGGTAGAGCCTCGGCTCATTTGCGAAGCACAGCAGCGCAACGATGAGCTA
AAAAAGAAACTATGCGGCAAGGAAACCATCAATGTCGTATTCCTTGCCGT
GTACGATTCCATGTGGAAATACGATGCCCTGTTTGCTGCCATGCTCCGGC
ATCCGCGTGTTCGGCCTGTACTCATCGTTTGTCCTGCGGACAATCTGCCG
GCCGGCGAACGGGGCGAACTCCTGCAAAAGACGCTTGCTCACTTTCAGGC
CAAAGGCTTCGATCCGCAACCGGCTTGTCGGGACAATGGAGAGGTGAGAG
ACATTCGGGCTGAATTTGCACCGGATTACATTTTCTATACCACACCTTAC
GACATCCAGTTGCCTCCGCCCCTTCGCCAGAGGACCTTTCCCGATATACT
CACCTGCTACAGCCTCTATGGCTATCCCCTCGAAGAATATCCTGACTGGT
ACGACCTCCTGTTTCACAATCTTCTGGGGTACTACTTTTTGGTTTCGGAA
GAAGACCTTCGCATCTACTCGCGACTCTCTCGCGTGAGGGGATGCAACGG
AGTGGTCAGCGGAGCACCTTTGTTCGATGCTTTCTCCTCCGAAATGAGGA
GTCGAACGGAAAAAAATAATGAGGAGCTACCCCTCGTAATCATCGCTCCG
CACCATTCGATAGAGCCTTGGGGATATAGCCTGTCCAATTTTCTCGATTA
TGCGGATACCTTCCTCCGACTGGCACGGAAGTACGAAGGCCGATTGCGCT
TTGCTTTCAAACCACATCCGATACTCAAGACCAAACTCTATGCTCCGGAA
TCGTGGGGACGCGAACGAACAGATCAGTACTACCGGGAATGGGCAGATAT
GCCTCATGCCGAATTGGCCGAAGGAGCTTATGTCGATCTCTTTTGTCGCT
CTTCGGCTCTCGTACATGATTGCAGTGCTTTCACCGTGGAATATCAGATC
GTGGGGCGTCCGGCCCTCTTTATGCGGAAGAACGGACGCCTTCCTCACGG
GCTCAACCGAGCTGCCCAAGAGGCCTTCGCGTTGCATGATATGGCAGATT
CTGCGGAAGACATCGATTCGTTTCTCCAAAAGATAGCAGAGCGCAGACCC
GATCCAGTAGCCGATAGGCGTCGGGTCTTCATCCGGGACTATTTGCTCCC
TCCCCGAGGGGCTACTGCCTCAGAGGTCATCATCGACACTTTGCTCACAT
CGCGTTCG

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