Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0111 IGR0107 IGR0112 IGR0109 IGR0106 IGR0113 IGR0114 IGR0110 IGR0108 PG0132 PG0127 PG0134 minD, - PG0129 spoJ, - PG0128 PG0130 PG0131 ntrC, - PG0136 PG0137 PG0138 PG0133 PG0132 PG0127 PG0134 minD, - PG0129 spoJ, - PG0128 PG0130 PG0131 ntrC, - PG0136 PG0137 PG0138 PG0133 PG0127 PG0134 minD, - PG0129 spoJ, - PG0128 PG0130 PG0131 ntrC, - PG0136 PG0137 PG0138 PG0135 PG0135 PG0132 PG0133


LANL Gene ID: PG0132

GenBank Locus Tag:

DNA Molecule Name:
1  

Genomic Island ID:
3

GenBank ID:


 Gene Name:


 Definition:
hypothetical protein

 Cellular Location:
Inner membrane, Cytoplasm [Evidence]

 Gene Start:
168495

Gene Stop:
168112

Gene Length:
384

Molecular Weight*:
13584

pI*:
5.80

Net Charge*:
-1.53

EC:
 

 Functional Class:
Unknown; Hypothetical  

 Gene Ontology:
Biological process
  GO:0009306    protein secretion

Cellular component
  GO:0016021    integral to membrane

Molecular function
  GO:0015450    protein translocase activity


 Pathway: pathway table

 Comment:
NO TIGR ID corresponds to this gene.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No significant hit found in gapped BLAST with E value less than e-04.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|53712376|ref|YP_098368.1|  putative protein-export membra...    96   7e-19
 gi|156858691|gb|EDO52122.1|  hypothetical protein BACUNI_046...    91   2e-17
 gi|156107605|gb|EDO09350.1|  hypothetical protein BACOVA_052...    89   8e-17
 gi|29349786|ref|NP_813289.1|  putative protein-export membra...    88   2e-16
 gi|150005145|ref|YP_001299889.1|  putative protein-export me...    86   8e-16
 gi|154491030|ref|ZP_02030971.1|  hypothetical protein PARMER...    85   1e-15
 gi|153809264|ref|ZP_01961932.1|  hypothetical protein BACCAC...    85   1e-15
 gi|150006863|ref|YP_001301606.1|  putative protein-export me...    82   8e-15
 gi|67941672|ref|ZP_00533733.1|  Preprotein translocase SecG ...    75   1e-12
 gi|83815198|ref|YP_446220.1|  putative protein-export membra...    57   3e-07


InterPro Summary:  InterProScan

InterPro
IPR004692
Family
Preprotein translocase SecG subunit
PF03840 [2-73]T 1.5e-08 PF03840 SecG SecG
TIGR00810 [2-72]T 2.2e-17 TIGR00810 secG: preprotein translocase, SecG subunit secG: preprotein translocase, SecG subunit
noIPR
unintegrated
unintegrated
signalp [1-27]? NA signalp signal-peptide signal-peptide
tmhmm [5-25]? NA tmhmm transmembrane_regions[53-73]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 2 to 73 (E-value = 1.8e-08) place PG0132 in the SecG family which is described as Preprotein translocase SecG subunit (PF03840)

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable signal  
1  
42
gram negative signal  
1  
22
transmembrane  
3  
20
transmembrane  
6  
22
transmembrane  
54  
71
transmembrane  
56  
72

Top PDB Hits:
-50% similar to PDB:2O3A Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus (E_value = );
-50% similar to PDB:176L PROTEIN FLEXIBILITY AND ADAPTABILITY SEEN IN 25 CRYSTAL FORMS OF T4 LYSOZYME (E_value = );
-52% similar to PDB:1Z45 Crystal structure of the gal10 fusion protein galactose mutarotase/UDP-galactose 4-epimerase from Saccharomyces cerevisiae complexed with NAD, UDP-glucose, and galactose (E_value = );
-51% similar to PDB:1TZT T. maritima NusB, P21 (E_value = );
-51% similar to PDB:1TZU T. maritima NusB, P212121 (E_value = );

Gene Protein Sequence:
MYIVLTILILLISLFLILVVVVQNSKGGGLAAGFASSNQIMGVRKTTDFL
EKATWWSAGIIAVLAIVSTHFLHTGKVDESQNVLKETLDKKVKEEKNSAV
INFGGDAAATESARPATGEATPEEGQAQ

Gene Nucleotide Sequence:  Sequence Viewer
ATGTACATCGTACTGACTATTCTCATCCTGCTCATATCGCTCTTCCTTAT
TCTGGTCGTAGTGGTACAGAACTCCAAAGGGGGCGGCTTGGCAGCCGGCT
TCGCATCCAGCAATCAGATCATGGGCGTCCGCAAGACTACCGATTTCCTC
GAGAAGGCCACTTGGTGGTCGGCCGGTATCATTGCCGTTCTGGCCATCGT
TTCTACTCACTTCCTCCACACGGGAAAGGTCGATGAGAGCCAAAACGTCC
TGAAGGAAACCCTGGACAAGAAGGTGAAGGAAGAAAAGAACTCTGCAGTG
ATCAACTTCGGTGGAGATGCCGCTGCTACGGAATCTGCCCGGCCCGCGAC
CGGAGAGGCCACTCCCGAGGAGGGGCAGGCACAA

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy