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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0129 IGR0130 IGR0133 IGR0134 IGR0132 IGR0135 IGR0131 PG0159 noxA,noxC, - PG0160 Pg-II fim c, - PG0161 PG0158 PG0164 ISPg4, - PG0162 PG0165 mfa1, - PG0163 PG0159 noxA,noxC, - PG0160 Pg-II fim c, - PG0161 PG0158 PG0164 ISPg4, - PG0162 PG0165 mfa1, - PG0163 Type: IS element, Name: ISPg4 - 7 PG0159 noxA,noxC, - PG0160 Pg-II fim c, - PG0161 PG0158 PG0164 ISPg4, - PG0162 PG0165 mfa1, - PG0163


LANL Gene ID: PG0161

GenBank Locus Tag: PG0176

DNA Molecule Name:
1  

GenBank ID:


Gene Name:
Pg-II fim c  

Definition:
Pg-II fimbriae c

Cellular Location:
Periplasm [Evidence]

Gene Start:
198748

Gene Stop:
199098

Gene Length:
351

Molecular Weight*:
12558

pI*:
4.70

Net Charge*:
-5.34

EC:
 

Functional Class:
Cell envelope; Surface structures  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
See Fimbrillins



Comment:
TIGR ID: PG0176

Proteomic Data: Proteomic Data Search
TIGR Annotationcell surface protein, interruption, GroupC (cell envelope)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0176-0.560.0015-1.300.00721.431.8e-12-1.300.0072
LANLPG01610.680.412.690.98
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
This sequence corresponds to 47826535 in Genbank.

This sequence corresponds to 22255321 in Genbank.

This sequence corresponds to 22255316 in Genbank.


 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|47826535|dbj|BAD20817.1|  Pg-II fimbriae c [Porphyromonas...   238   6e-62
 gi|22255319|dbj|BAC07530.1|  Pg-II fimbriae b [Porphyromonas...   238   8e-62
 gi|22255316|dbj|BAC07529.1|  Pg-II fimbriae a [Porphyromonas...   238   1e-61
 gi|523234|dbj|BAA05960.1|  cell surface protein precursor [P...   238   1e-61
 gi|3345479|dbj|BAA31954.1|  67kDa fimbrillin [Porphyromonas ...   238   1e-61
 gi|523232|dbj|BAA05959.1|  cell surface protein precursor [P...   238   1e-61
 gi|2541865|dbj|BAA22842.1|  pga67 [Porphyromonas gingivalis]      237   1e-61
 gi|5832527|dbj|BAA84008.1|  53kDa major outer membrane prote...    90   4e-17


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
PS51257 [1-20]T 6.000 PS51257 PROKAR_LIPOPROTEIN PROKAR_LIPOPROTEIN
signalp [1-18]? NA signalp signal-peptide signal-peptide


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 1-116 are identical to a (PRECURSOR SIGNAL CELL SURFACE PROTEIN PGA67 A FIMBRILLIN) protein domain (PD025415 which is seen in Q51819_PORGI.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
50
gram negative signal  
1  
21

Top PDB Hits:
-42% similar to PDB:1KBV NITRITE-SOAKED CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE (E_value = );
-42% similar to PDB:1KBW CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE (E_value = );
-45% similar to PDB:2AC1 Crystal structure of a cell-wall invertase from Arabidopsis thaliana (E_value = );
-50% similar to PDB:1Z2I CRYSTAL STRUCTURE OF Agrobacterium tumefaciens MALATE DEHYDROGENASE, NEW YORK STRUCTURAL GENOMICS CONSORTIUM (E_value = );
-44% similar to PDB:1ZC0 Crystal structure of human hematopoietic tyrosine phosphatase (HePTP) catalytic domain (E_value = );

Gene Protein Sequence:
MKLNKMFLVGALLSLGFASCSKEGNGPDPDNAAKSYMSMTLSMPMGSARA
GDGQDQANPDYHYVGEWAGKDKIEKVSIYMVPQGGPGLVESAEDLDFGTY
YENPTIDPATHNAILKH

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAGTTAAACAAAATGTTTTTGGTCGGAGCATTGCTCTCATTGGGCTT
TGCTTCTTGTAGTAAAGAGGGCAATGGGCCCGATCCGGACAATGCGGCGA
AGTCGTATATGTCTATGACATTGTCCATGCCTATGGGAAGTGCTCGTGCG
GGTGACGGACAGGATCAAGCTAACCCTGACTACCATTATGTAGGAGAGTG
GGCAGGAAAAGACAAAATTGAGAAAGTGAGCATCTACATGGTGCCTCAGG
GTGGCCCTGGGCTTGTGGAGAGTGCTGAAGATCTTGATTTTGGTACATAT
TATGAAAATCCTACTATAGATCCTGCAACCCACAATGCCATTTTGAAACA
T

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