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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0168 IGR0167 IGR0161 IGR0162 IGR0163 IGR0164 IGR0170 IGR0169 IGR0165 IGR0166 IGR0160 PG0202 PG0200 PG0201 PG0199 PG0204 ISPg4, - PG0205 cbiH, - PG0193 PG0198.2 PG0195 PG0194 PG0196 PG0198 PG0202 PG0200 PG0201 PG0199 PG0204 ISPg4, - PG0205 cbiH, - PG0193 PG0198.2 PG0195 PG0194 PG0196 PG0198 Type: IS element, Name: ISPg4 - 7 PG0202 PG0200 PG0199 PG0204 ISPg4, - PG0205 cbiH, - PG0193 PG0201 PG0198.2 PG0194 PG0198 PG0197 PG0197 PG0196 PG0195


LANL Gene ID: PG0198.2

GenBank Locus Tag:

DNA Molecule Name:
1  

GenBank ID:


Gene Name:


Definition:
hypothetical protein

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
254587

Gene Stop:
254955

Gene Length:
369

Molecular Weight*:
13388

pI*:


Net Charge*:


EC:
 

Functional Class:
Unknown; Hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
NO TIGR ID corresponds to this gene.

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
No significant hit found in gapped BLAST with E value less than e-04.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.


***** No hits found ******




InterPro Summary:  InterProScan
























noIPR
unintegrated		






unintegrated





tmhmm
[90-110]? NA tmhmm transmembrane_regions
transmembrane_regions












COGS Summary:  COGS Search
No hit to the COGs database.


Blocks Summary:  Blocks Search
No significant hit to the Blocks database.


ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database


Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
cleavable signal  
1  
28
gram negative signal  
1  
25
transmembrane  
94  
110

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:

VSWKKLSAKLSIFSFAFSPIKDSTAAPAIPPVIVPRPGITLPIAAPIAAP
FPFFNVLRASLLPKLLLGFPTVATPHTGHLHALLLISCRCFIYSCIFSIS
LYALFFFFFINLISSCCYHSGNC

Gene Nucleotide Sequence:  Sequence Viewer

GTGTCCTGGAAAAAATTGTCAGCAAAGTTGTCGATATTTTCATTTGCTTT
TTCTCCAATCAAAGATTCTACTGCTGCACCTGCAATTCCTCCCGTGATTG
TCCCAAGACCCGGAATTACACTTCCTATAGCAGCCCCTATAGCCGCTCCT
TTTCCTTTTTTCAATGTATTGCGCGCTAGCTTACTGCCAAAGCTTCTTTT
GGGCTTTCCGACAGTTGCTACTCCACATACGGGGCATCTACATGCTTTAC
TACTCATTTCTTGTCGCTGTTTTATTTATTCTTGTATTTTTTCAATCTCT
CTTTACGCTCTTTTTTTTTTTTTCTTTATAAATCTGATAAGCTCTTGCTG
CTATCATAGCGGCAACTGT








    

      
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