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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0221 IGR0219 IGR0217 IGR0220 IGR0216 IGR0218 IGR0215 PG0261 PG0254 PG0257 PG0253 PG0258 PG0260 PG0262 pkn1, - PG0263 PG0259 PG0265 PG0261 PG0254 PG0257 PG0253 PG0258 PG0260 PG0262 pkn1, - PG0263 PG0259 PG0265 PG0261 PG0254 PG0257 PG0253 PG0258 PG0260 PG0262 pkn1, - PG0263 PG0259 PG0265 PG0264 PG0264


LANL Gene ID: PG0261

GenBank Locus Tag:

DNA Molecule Name:
1  

GenBank ID:


Gene Name:


Definition:
hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
320583

Gene Stop:
320314

Gene Length:
270

Molecular Weight*:
10719

pI*:
9.50

Net Charge*:
5.03

EC:
 

Functional Class:
Unknown; Hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
NO TIGR ID corresponds to this gene.

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
No hit found in gapped BLAST.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.


***** No hits found ******




InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.


Blocks Summary:  Blocks Search
No significant hit to the Blocks database.


ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database


Structural Feature(s):
















Feature Type  Start  Stop
transmembrane  
23  
39
transmembrane  
35  
57

Top PDB Hits:
-52% similar to PDB:1X62  Solution structure of the LIM domain of carboxyl terminal LIM domain protein 1 (E_value = );

Gene Protein Sequence:

VVKRSPECYYCTSGAYSLKEITLSVLFFVEEKILFARIIRPNIFYRFVDF
PFIFHFLQILDDFKRSTRTLCIVYQLIFGCRPRSIFQFGG

Gene Nucleotide Sequence:  Sequence Viewer

GTGGTAAAACGAAGCCCCGAGTGCTATTATTGCACATCCGGGGCATATTC
GCTTAAGGAGATTACATTATCAGTACTCTTCTTCGTTGAAGAAAAAATCC
TCTTTGCTCGGATAATCCGGCCAAATATCTTCTATCGATTCGTAGATTTC
CCCTTCATCTTCCATTTCCTGCAGATTCTCGATGACTTCAAGAGGAGCAC
CCGAACGTTGTGCATAGTCTATCAACTCATCTTTGGTTGCAGGCCAAGGA
GCATCTTCCAATTTGGAGGC








    

      
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