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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0222 IGR0221 IGR0227 IGR0224 IGR0225 IGR0223 IGR0226 PG0269 PG0270 purL, - PG0272 PG0267 chrA, - PG0268 PG0266 pkn1, - PG0263 PG0265 PG0269 PG0270 purL, - PG0272 PG0267 chrA, - PG0268 PG0266 pkn1, - PG0263 PG0265 PG0269 PG0270 purL, - PG0272 smf, - PG0271 smf, - PG0271 PG0267 chrA, - PG0268 PG0266 pkn1, - PG0263 PG0265 PG0264 PG0264


LANL Gene ID: PG0267

GenBank Locus Tag:

DNA Molecule Name:
1  

GenBank ID:


Gene Name:


Definition:
conserved hypothetical protein(possible chromate transport protein)

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
326843

Gene Stop:
327430

Gene Length:
588

Molecular Weight*:
21602

pI*:
10.70

Net Charge*:
8.60

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:
Biological process
  GO:0015703    chromate transport

Cellular component
  GO:0016020    membrane

Molecular function
  GO:0015109    chromate transporter activity


Pathway: pathway table

Comment:
NO TIGR ID corresponds to this gene.

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Residues 37 to 173 share 24% identity with dbj|BAB04588.1| (AP001510), a chromate transporter in Bacillus halodurans.
Residues 35 to 126 share 33% identity with pir||G71379, a probable chromate transport protein in syphilis spirochete.
Residues 34 to 182 share 23% identity with dbj|BAA18657.1| (D90916), a chromate transport protein in Synechocystis sp..

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|154490317|ref|ZP_02030578.1|  hypothetical protein PARMER...   190   3e-47
 gi|156861661|gb|EDO55092.1|  hypothetical protein BACUNI_011...   190   4e-47
 gi|60682625|ref|YP_212769.1|  putative chromate transport pr...   189   9e-47
 gi|29347145|ref|NP_810648.1|  chromate transport protein [Ba...   188   1e-46
 gi|53714603|ref|YP_100595.1|  chromate transport protein [Ba...   187   2e-46
 gi|156108340|gb|EDO10085.1|  hypothetical protein BACOVA_044...   186   6e-46
 gi|153808458|ref|ZP_01961126.1|  hypothetical protein BACCAC...   186   7e-46
 gi|150002688|ref|YP_001297432.1|  putative chromate transpor...   185   2e-45
 gi|150009933|ref|YP_001304676.1|  chromate transport protein...   184   3e-45
 gi|156862310|gb|EDO55741.1|  hypothetical protein BACUNI_005...   180   4e-44


InterPro Summary:  InterProScan

InterPro
IPR003370
Domain
Chromate transporter region
PF02417 [13-190]T 8.2e-36 PF02417 Chromate_transp Chromate_transp
InterPro
IPR006741
Family
Accessory gene regulator B
SM00793 [38-188]T 1e+02 SM00793 no description no description
noIPR
unintegrated
unintegrated
signalp [1-35]? NA signalp signal-peptide signal-peptide
tmhmm [19-39]? NA tmhmm transmembrane_regions[60-80]? NA tmhmm transmembrane_regions[90-110]? NA tmhmm transmembrane_regions[125-145]? NA tmhmm transmembrane_regions[151-183]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
BeTs to 5 clades of COG2059
COG name: Chromate transport protein ChrA
Functional Class: P
The phylogenetic pattern of COG2059 is -m----Vc-B------O----
Number of proteins in this genome belonging to this COG is 2
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 35-119 are 30% similar to a (PROTEIN CHROMATE TRANSPORT TRANSMEMBRANE PLASMID) protein domain (PD004912 which is seen in O05215_BACSU.


Paralogs:  Local Blast Search
Residues 15 to 139 share 40% identity with PG0268, a predicted hromate transport protein.

Pfam Summary:  Pfam Search
Residues 13 to 190 (E-value = 7.1e-36) place PG0267 in the Chromate_transp family which is described as Chromate transporter (PF02417)

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable signal  
1  
61
transmembrane  
7  
23
transmembrane  
12  
36
transmembrane  
62  
78
transmembrane  
64  
82
transmembrane  
90  
106
transmembrane  
92  
109
transmembrane  
118  
134
transmembrane  
123  
142
transmembrane  
149  
165
transmembrane  
161  
181
transmembrane  
166  
182

Top PDB Hits:
-49% similar to PDB:1SFN Crystal structure of conserved hypothetical protein from Deinococcus radiodurans R1 (E_value = );

Gene Protein Sequence:
LSVLSSCLFFAVNPYLSLFLTFFRIGGFTFGGGYAMLPLIKADIVDNHHW
LSEEDFLDLFAVAQSLPGVFAVNISIFVGYRLRGYAGAAVCALGTILPSF
LIILAVAMFFAQMRDNKIIAAIFRGLRPAVIAMIAAPAISTWKAMKMKAV
SLWIPIFAAILVWYAGVSPVWIILVAAALGILYSRYLRFRIRNMHS

Gene Nucleotide Sequence:  Sequence Viewer
TTGTCCGTTTTGTCAAGCTGTCTCTTTTTTGCCGTGAATCCATATCTATC
CCTCTTTCTCACCTTTTTCCGTATCGGCGGATTCACCTTCGGTGGAGGTT
ATGCCATGTTGCCACTGATCAAGGCCGATATAGTGGATAACCACCACTGG
CTATCGGAGGAGGATTTTCTGGATCTTTTTGCCGTTGCGCAATCCCTGCC
CGGAGTATTTGCCGTCAATATATCCATCTTCGTAGGCTATCGCCTCAGAG
GATATGCCGGAGCAGCCGTTTGCGCCTTGGGGACTATTCTTCCCTCGTTC
CTGATCATTCTGGCTGTAGCCATGTTCTTTGCGCAGATGAGGGACAACAA
AATCATTGCAGCCATTTTCCGAGGATTGCGTCCTGCTGTCATTGCTATGA
TCGCAGCTCCGGCCATCTCTACATGGAAAGCCATGAAGATGAAAGCCGTT
TCGCTCTGGATCCCGATCTTTGCTGCTATTCTTGTTTGGTATGCCGGAGT
ATCTCCCGTGTGGATTATTCTTGTTGCCGCAGCTTTGGGTATCCTCTATA
GTCGTTACCTTCGCTTCCGTATTCGGAATATGCATTCC

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